View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4227_high_7 (Length: 425)
Name: NF4227_high_7
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 7215699 - 7216091
Alignment:
| Q |
19 |
ctatcactttaatgtactttcatcaaatcttttatgaatgctacatatatatgatctttatttaattaatataactaaggtaagtatataaaacgaacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7215699 |
ctatcactttaatgtactttcatcaaatcttttatgaatgctacatatatatgatctttatttaattaatataactaaggtaagtatatcaaacgaacaa |
7215798 |
T |
|
| Q |
119 |
taaagtattatggtaccatggagcaagcatcatctggagattcattgtctgcttgctcaagtgaagcatgtaataaagttatggtacaaccaaccttcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7215799 |
taaagtattatggtaccatggagcaagcatcatctggagattcattgtctgcttgctcaagtcaagcatgtaataaagttatggtacaaccaaccttcat |
7215898 |
T |
|
| Q |
219 |
atctagtactattacaacaccttaggcaatcatctcaacaaaactattgatttcatatgatattttttatacaactagacatatagtgtgtttggaattg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7215899 |
atctagtactattacaacaccttaggcaatcatctcaacaaaactattgatttcatatgatattttttatacaactagacatatagtgtgtttggtattg |
7215998 |
T |
|
| Q |
319 |
tggtcaagttacttcagacacatcaccattctcacatcaaaaacaactttaagatgcgagaaaaacgattagaaggtgaatcgaaaaatagtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7215999 |
tggtcaagttacttcagacacatcaccattctcacatcaaaaacaactttgggatgcgagaaaaacgattagaaggtgaattgaaacatagtt |
7216091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University