View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_1 (Length: 646)
Name: NF4227_low_1
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_1 |
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| [»] scaffold0152 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: scaffold0152 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 275 - 646
Target Start/End: Original strand, 10789 - 11152
Alignment:
| Q |
275 |
tgattttttgttgaatctttgcactttcagggtgtagtcatgatgctaaccaagtaaccatgtttggatataaggatcaaagataggtttggtaagacaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10789 |
tgattttttgttgaatctttgcactttcagggtgtagtcatgctgctaac--------catgtttggatataaggatcaaagataggtttggtaagacaa |
10880 |
T |
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| Q |
375 |
atcgttgtccaacatttacccctccaatgaagtttaaaattgaaagaaactacaatccaacgtatttgattcatgttattcctttgcctttagtgcatga |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10881 |
atcgttgtccaacatttacccctccaatgaagtttaaaattgaaagaaactacaatccaacgtatttgattcatgttgttcctttgcctttagtgcatga |
10980 |
T |
|
| Q |
475 |
cttgatgaatttccaatttatttatgagaaaaagttgtcagctgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttct |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10981 |
cttgatgaatttccaatttatttatgagaaaaagttgtcagttgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttct |
11080 |
T |
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| Q |
575 |
aatatccataattcagtacataaaacatggtttaattggatgacaaggagtattcctaatcttttttccttc |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11081 |
aatatccataattcagtacataaaacatggtttaattggatgacaaggagtattcctaatattttttccttc |
11152 |
T |
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Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 506 - 646
Target Start/End: Complemental strand, 2889074 - 2888934
Alignment:
| Q |
506 |
aagttgtcagctgatgagattaaggatggctatatggtaggttgtcatgtatacttttgttttctttctaatatccataattcagtacataaaacatggt |
605 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2889074 |
aagttgtcagctgatgagattaaggatgactatatggtcggttgtcatgtatacttttgttttctttctaatatccataattcagtagataaaacatggt |
2888975 |
T |
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| Q |
606 |
ttaattggatgacaaggagtattcctaatcttttttccttc |
646 |
Q |
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| T |
2888974 |
ttaattggatgacaaggagtattcctaatattttttccttc |
2888934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 18418202 - 18418094
Alignment:
| Q |
137 |
gtttgtttcctatatatacatgcatctttttgcgtctcttggtttcatcctggttgttttatttctcagaaccaattgtctattatcaaga-agaaaaaa |
235 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
18418202 |
gtttgtttcctatatatacatgcatctttttgtgtctcttggtttcatcctggttgttttatttctcagaaccaattgtctattatcaagagaaaaaaaa |
18418103 |
T |
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| Q |
236 |
tgtcaagag |
244 |
Q |
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||||||||| |
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| T |
18418102 |
tgtcaagag |
18418094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18418361 - 18418249
Alignment:
| Q |
18 |
gtagcaatatttaacatgcctttttattaatttggtgatataatgccttttcaattgttgtgccggattgaaaacacctattttctccactcaacctctc |
117 |
Q |
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|||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||| || ||||| ||| | | |||||||||| |||||| |
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| T |
18418361 |
gtagcaatatttaacatgtctttctattaatttggtgatacaatgccttttcaattgttgtgccgtatggaaaatacc-aatctctccactcagcctctc |
18418263 |
T |
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| Q |
118 |
ttttcgatttccaa |
131 |
Q |
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||||| |||||||| |
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| T |
18418262 |
ttttcaatttccaa |
18418249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 21006019 - 21005913
Alignment:
| Q |
137 |
gtttgtttcctatatatacatgcatctttttgcgtctcttggtttcatcctggttgttttatttctcagaaccaattgtctattatcaagaagaaaaaat |
236 |
Q |
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||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
21006019 |
gtttgtttcctatatatacatgcatgtttttgtttctgttggtttcatcctggttgttttatttctcataaccaattgtctattatcaagaa-aaaaaat |
21005921 |
T |
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| Q |
237 |
gtcaagag |
244 |
Q |
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|||||||| |
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| T |
21005920 |
gtcaagag |
21005913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 21006110 - 21006039
Alignment:
| Q |
66 |
tttcaattgttgtgccggattgaaaacacctattttctccactcaacctctcttttcgatttccaaggcatgt |
138 |
Q |
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|||| |||||||||||| || ||||||||| || | ||||||||| ||||||||||||||||||||||||||| |
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| T |
21006110 |
tttctattgttgtgccgtatggaaaacaccaatct-ctccactcagcctctcttttcgatttccaaggcatgt |
21006039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 21011976 - 21011932
Alignment:
| Q |
18 |
gtagcaatatttaacatgcctttttattaatttggtgatataatg |
62 |
Q |
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| T |
21011976 |
gtagcaatatttaacatgcctttttattaatttggtgatacaatg |
21011932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 50232804 - 50232698
Alignment:
| Q |
137 |
gtttgtttcctatatatacatgcatctttttgcgtctcttggtttcatcctggttgttttatttctcagaaccaattgtctattatcaagaagaaaaaat |
236 |
Q |
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|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
50232804 |
gtttgttttctatatatacatgcatgtttttgtttctcttggtttcatcctggttgttttatttctcataaccaattgtctattatcaagaa-aaaaaat |
50232706 |
T |
|
| Q |
237 |
gtcaagag |
244 |
Q |
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|||||||| |
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| T |
50232705 |
gtcaagag |
50232698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 50232956 - 50232912
Alignment:
| Q |
18 |
gtagcaatatttaacatgcctttttattaatttggtgatataatg |
62 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50232956 |
gtagcaatatttaacatgcctttttattaatttggtgatacaatg |
50232912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 50833567 - 50833435
Alignment:
| Q |
18 |
gtagcaatatttaacatgcctttttattaatttggtgatataatgc-ct------------tttcaattgttgtgccggattgaaaacacctattttctc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| || ||||||||| || | ||| |
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| T |
50833567 |
gtagcaatatttaacatgcctttttattaatttggtgatacaatgaactacatttaattaatttctattgttgtgccgtatggaaaacaccaatct-ctc |
50833469 |
T |
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| Q |
105 |
cactcaacctctcttttcgatttccaaggcatgt |
138 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50833468 |
cactcaacctctcttttcgatttccaaggcatgt |
50833435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 50842286 - 50842418
Alignment:
| Q |
18 |
gtagcaatatttaacatgcctttttattaatttggtgatataatgc-ct------------tttcaattgttgtgccggattgaaaacacctattttctc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| || ||||||||| || | ||| |
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| T |
50842286 |
gtagcaatatttaacatgcctttttattaatttggtgatacaatgaactacatttaattaatttctattgttgtgccgtatggaaaacaccaatct-ctc |
50842384 |
T |
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| Q |
105 |
cactcaacctctcttttcgatttccaaggcatgt |
138 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
50842385 |
cactcaacctctcttttcgatttccaaggcatgt |
50842418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 32793132 - 32793061
Alignment:
| Q |
66 |
tttcaattgttgtgccggattgaaaacacctattttctccactcaacctctcttttcgatttccaaggcatgt |
138 |
Q |
| |
|
|||| |||||||||||| || ||||||||| || | ||||||||| |||||||||||||||||||| |||||| |
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| T |
32793132 |
tttctattgttgtgccgtatggaaaacaccaatct-ctccactcagcctctcttttcgatttccaatgcatgt |
32793061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 32793194 - 32793149
Alignment:
| Q |
18 |
gtagcaatatttaacatgcct-ttttattaatttggtgatataatg |
62 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32793194 |
gtagcaatatttaacatgccttttttattaatttggtgatacaatg |
32793149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 24535366 - 24535235
Alignment:
| Q |
19 |
tagcaatatttaacatgcctttttattaatttggtgatataatgc-ct------------tttcaattgttgtgccggattgaaaacacctattttctcc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| || ||||||||| || | |||| |
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| T |
24535366 |
tagcaatatttaacatgcctttttattaatttggtgatacaatgaactacatttaattaatttctattgttgtgccgtatggaaaacaccaatct-ctcc |
24535268 |
T |
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| Q |
106 |
actcaacctctcttttcgatttccaaggcatgt |
138 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
24535267 |
actcagcctctcttttcgatttccaaggcatgt |
24535235 |
T |
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