View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_low_11 (Length: 413)

Name: NF4227_low_11
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_low_11
NF4227_low_11
[»] chr5 (2 HSPs)
chr5 (175-396)||(37046609-37046850)
chr5 (7-178)||(37047125-37047295)
[»] chr6 (4 HSPs)
chr6 (281-332)||(6584652-6584703)
chr6 (336-393)||(6584544-6584602)
chr6 (178-252)||(6590783-6590854)
chr6 (336-378)||(6590653-6590695)
[»] chr8 (1 HSPs)
chr8 (289-319)||(8537610-8537640)
[»] chr4 (2 HSPs)
chr4 (295-325)||(21836082-21836112)
chr4 (336-372)||(21836002-21836038)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 175 - 396
Target Start/End: Complemental strand, 37046850 - 37046609
Alignment:
Q  175 aagtttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgacgtacatata------------- 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||                 
T  37046850 aagtttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgacgtatatatagaattcacaaaca 37046751  T
Q  262 --tagtttcatttcaacagtatgaattttgcctatatacctcaacatttttagaagctcct-----tgatctgagtttaaataaaagaaacaaataattg 354  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| |||||||||    
T  37046750 tatagtttcatttcaacagtatgaattttgcctatatacctcaacatttttagaagctcctctccttgatctgagtttaaataaaagaaaaaaataattg 37046651  T
Q  355 tatcatttgagaagctcttgaaagctgaaactaatttaaatg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37046650 tatcatttgagaagctcttgaaagctgaaactaatttaaatg 37046609  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 37047295 - 37047125
Alignment:
Q  7 tccaagaatattatccgccgatgacaacactagcacacataataagataactttttgaataaatggagacattgcaacttaggttaatcttttgcttaga 106  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37047295 tccaagaatattatc-gccgatgacaacactagcacacataataagataactttttgaataaatggagacattgcaacttaggttaatcttttgcttaga 37047197  T
Q  107 agcaggggctgacctggaccttcaatattgattgactgctttctgcctacgagttttataggaaatacaagt 178  Q
    ||||||||| |||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  37047196 agcaggggcggaccaggatcttcaatatcgattgactgctttctgcctatgagttttataggaaatacaagt 37047125  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 6584703 - 6584652
Alignment:
Q  281 tgaattttgcctatatacctcaacatttttagaagctccttgatctgagttt 332  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  6584703 tgaattttgcctatatgcctcgacatttttagaagctccctgatctgagttt 6584652  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 6584602 - 6584544
Alignment:
Q  336 taaaagaaacaaataattgtatcatttgagaagctcttgaaagct-gaaactaatttaa 393  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  6584602 taaaagtaacaaataattgtctcatttgaaaagctcttgaaagctagaaactaatttaa 6584544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 6590854 - 6590783
Alignment:
Q  178 tttttgtatctcacaagactatgtcattttgcataatatgtagataactttcaaactgattgaaaccattatgac 252  Q
    |||||||||||||||||||     |||||| ||||||||||||||||||||||||| |||| |||||| ||||||    
T  6590854 tttttgtatctcacaagacac---cattttacataatatgtagataactttcaaaccgattcaaaccaatatgac 6590783  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 6590695 - 6590653
Alignment:
Q  336 taaaagaaacaaataattgtatcatttgagaagctcttgaaag 378  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  6590695 taaaagaaacaaataattgtctcatttgaaaagctcttgaaag 6590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 8537610 - 8537640
Alignment:
Q  289 gcctatatacctcaacatttttagaagctcc 319  Q
    |||||||||||||||||||||||||||||||    
T  8537610 gcctatatacctcaacatttttagaagctcc 8537640  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 325
Target Start/End: Complemental strand, 21836112 - 21836082
Alignment:
Q  295 atacctcaacatttttagaagctccttgatc 325  Q
    |||||||||||||||||||||||||||||||    
T  21836112 atacctcaacatttttagaagctccttgatc 21836082  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 21836038 - 21836002
Alignment:
Q  336 taaaagaaacaaataattgtatcatttgagaagctct 372  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  21836038 taaaagaaacagataattgtctcatttgagaagctct 21836002  T

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