View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_12 (Length: 409)
Name: NF4227_low_12
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 36942969 - 36943352
Alignment:
| Q |
1 |
atcagcagttgtcctccaagtacaggtcgcctgtgataaggtctcaagatcaagtgaatggcagttattatcatgctaatcagtcgacttgcagagcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942969 |
atcagcagttgtcctccaagtacaggtcgcctgtgataaggtctcaagatcaagtgaatggcagttattatcatgctaatcagtcgacttgcagagcatc |
36943068 |
T |
|
| Q |
101 |
agagcctttacttaacgatgcatctggtccgaaactgcacaaagattctgacgaacttgagattgaaataccatttgagctcatcacttcatgtgtggct |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36943069 |
agagcctttacttaacgatgcatctggtctgaaactgcacaaagattctgacgaagttgagattgaaataccatttgagctcatcacttcatgtgtggct |
36943168 |
T |
|
| Q |
201 |
acattaaccatgattcaggtaattaaagacatgtcaaacttggcctatttcacaacttcccatctgattgtaaagttaatgttttccttggcatactctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36943169 |
acattaaccatgattcaggtaattaaagacatgtcaaacttggcctatttcacaacttcccatctgattgtaaagttaatgttttccttggcatactctt |
36943268 |
T |
|
| Q |
301 |
caaaagagttttgaacagcacatctttgggggcgtgcacctattttaaatggtgaactggtgcatcatgatactatgaaaataa |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36943269 |
caaaagagttttgaacagcacatctttgggggcgtgcacctattttaaatggtgaacaggtgcatcatgatactatgaaaataa |
36943352 |
T |
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