View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_13 (Length: 394)
Name: NF4227_low_13
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 1052350 - 1052199
Alignment:
| Q |
226 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgt-tattaattgctcatttgataaaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1052350 |
tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtcaattaattgctcattagataaaa |
1052251 |
T |
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| Q |
325 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
376 |
Q |
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| T |
1052250 |
ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
1052199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 1052973 - 1052870
Alignment:
| Q |
21 |
ctcggttgtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1052973 |
ctcggttgtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgac |
1052874 |
T |
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| Q |
121 |
aaac |
124 |
Q |
| |
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|||| |
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| T |
1052873 |
aaac |
1052870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 1046306 - 1046210
Alignment:
| Q |
28 |
gtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
124 |
Q |
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| T |
1046306 |
gtgtgaattgtgatatttcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaac |
1046210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 1032926 - 1032876
Alignment:
| Q |
326 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
376 |
Q |
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| T |
1032926 |
taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa |
1032876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 367
Target Start/End: Complemental strand, 1046130 - 1045975
Alignment:
| Q |
210 |
taattaaactagtgaatataaaataagtatcat-ctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtta-ttaa |
307 |
Q |
| |
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|||||||||||||||| ||||| || |||||| || ||||||||||| ||||| |||||||| |||||| ||||||| | |||||| ||||| |||| |
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| T |
1046130 |
taattaaactagtgaacataaatcaa-tatcattctgtaacaaaaattcaattcctacctaaaaa-aatact-gaaaaatca-aaaaatttgttagttaa |
1046035 |
T |
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| Q |
308 |
ttgctcatttgataaaattaaatacatactagaattagaaactcttccaacatgccaaat |
367 |
Q |
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||||| ||||||| ||| ||||| ||||| |||||||||||| || |||||| ||||||| |
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| T |
1046034 |
ttgctaatttgattaaactaaatgcataccagaattagaaaccctaccaacaagccaaat |
1045975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 1043321 - 1043275
Alignment:
| Q |
339 |
gaattagaaactcttccaacatgccaaatctgacagaataatctacc |
385 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
1043321 |
gaatttgaaactcttccaacatgccaaatctgacagaaaaatatacc |
1043275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 1071071 - 1071009
Alignment:
| Q |
62 |
aatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
124 |
Q |
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|||||||||| | ||| | |||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
1071071 |
aatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaac |
1071009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 1049625 - 1049579
Alignment:
| Q |
339 |
gaattagaaactcttccaacatgccaaatctgacagaataatctacc |
385 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
1049625 |
gaatttgaaactcttccaacatgccaaatttgacagaaaaatatacc |
1049579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 1065080 - 1065046
Alignment:
| Q |
339 |
gaattagaaactcttccaacatgccaaatctgaca |
373 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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| T |
1065080 |
gaatcagaaactcttccaacatgccaaatctgaca |
1065046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 1058052 - 1058007
Alignment:
| Q |
331 |
acatactagaattagaaactcttccaacatgccaaatctgacagaa |
376 |
Q |
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|||||| || || ||||||||||||||| ||||||||||||||||| |
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| T |
1058052 |
acataccagtatcagaaactcttccaacgtgccaaatctgacagaa |
1058007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 1065347 - 1065270
Alignment:
| Q |
47 |
aaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac |
124 |
Q |
| |
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|||||||| || || |||||||||||||||| |||||||| || ||||||||||| || |||||||| ||| |||| |
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| T |
1065347 |
aaaaccattacttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaac |
1065270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 1070392 - 1070347
Alignment:
| Q |
331 |
acatactagaattagaaactcttccaacatgccaaatctgacagaa |
376 |
Q |
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|||||| || || |||||||||||||||||||||||| |||||||| |
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| T |
1070392 |
acataccagtatcagaaactcttccaacatgccaaatttgacagaa |
1070347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 1051077 - 1050993
Alignment:
| Q |
29 |
tgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccattt |
113 |
Q |
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||||||||||| |||| || | |||||||||||||||||||||| ||||| ||| || |||||| ||||| |||| |||||| |
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| T |
1051077 |
tgtgaattgtgatatttcaacagcatcacctccaatttgtggtgtaagtagcttgcttgcagaagatgttggttcttgtccattt |
1050993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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