View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_18 (Length: 325)
Name: NF4227_low_18
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 16186284 - 16186395
Alignment:
| Q |
198 |
gactaatgatatttccattcatccatcaagaagaaaacaagttggaaatataagtacgacacgaaactcttataagccaaaggccaaaaataaaagaagt |
297 |
Q |
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| T |
16186284 |
gactaatgatatttccattcatccatcaagaagaaaacaagttggaaatataagtacgacacaaaactcttataagccaaaggccaaaaataaaagaagt |
16186383 |
T |
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| Q |
298 |
aacatcctatat |
309 |
Q |
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|||||||||||| |
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| T |
16186384 |
aacatcctatat |
16186395 |
T |
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Target: chr7; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 16186087 - 16186223
Alignment:
| Q |
1 |
tcaattatgtaattataaatccaaattgctttatttgcgcaagtttcaattgtatttcnnnnnnngtgtattgatcaaaataacaaatccaagatcacaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
16186087 |
tcaattatgtaattataaatccaaattgttttgtttgcgcaagtttcaattgtatttcaaaaaaagagtattgatcaaaataacaaatccaagatcacaa |
16186186 |
T |
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| Q |
101 |
aatgatcaaagtgcatgaaatcaagggatgctgattc |
137 |
Q |
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| T |
16186187 |
aatgatcaaagtgcatgaaatcaagggatgctgattc |
16186223 |
T |
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