View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_19 (Length: 309)
Name: NF4227_low_19
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 47424704 - 47424411
Alignment:
| Q |
1 |
aacatcaatttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacgtagattagatggttt |
100 |
Q |
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| T |
47424704 |
aacatcaatttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatggttt |
47424605 |
T |
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| Q |
101 |
ctgcagtgttgtagatgatttttcgtaaggtcgctgaaaattgatttcaaggttatgctaagaataatccttttttcttctagagaagaggcaacctagg |
200 |
Q |
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| T |
47424604 |
ctgcagtgttgtagatgatttttcgtaaggtcgttgaaaattgatttcaaggttatgctaagaataatccttttttcttctagagaagaggcaacctagg |
47424505 |
T |
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| Q |
201 |
ttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggtctaccacagatgaaagtatagggatggatgtaatt |
294 |
Q |
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| T |
47424504 |
ttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggtctaccacagatgaaagtatagggatggatgtaatt |
47424411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 47391129 - 47391042
Alignment:
| Q |
9 |
tttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacgtagattagatg |
96 |
Q |
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| T |
47391129 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtaggcagaatagatg |
47391042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 47419492 - 47419405
Alignment:
| Q |
9 |
tttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacgtagattagatg |
96 |
Q |
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| T |
47419492 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
47419405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 47421964 - 47421873
Alignment:
| Q |
9 |
tttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacgtagattagatggttt |
100 |
Q |
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| T |
47421964 |
tttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatagttt |
47421873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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