View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_low_20 (Length: 293)

Name: NF4227_low_20
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_low_20
NF4227_low_20
[»] chr7 (10 HSPs)
chr7 (1-160)||(23822116-23822274)
chr7 (156-274)||(24989732-24989850)
chr7 (156-274)||(8417677-8417795)
chr7 (194-274)||(7568235-7568315)
chr7 (186-273)||(18674552-18674639)
chr7 (203-274)||(23320032-23320103)
chr7 (200-274)||(45062518-45062592)
chr7 (187-274)||(48390376-48390464)
chr7 (203-274)||(41851071-41851142)
chr7 (186-262)||(48394229-48394306)
[»] chr3 (14 HSPs)
chr3 (156-274)||(54748009-54748127)
chr3 (156-274)||(25096043-25096161)
chr3 (156-274)||(26848216-26848334)
chr3 (156-274)||(25313382-25313501)
chr3 (156-274)||(35613075-35613194)
chr3 (194-274)||(48905690-48905770)
chr3 (156-274)||(23026342-23026461)
chr3 (156-274)||(50834025-50834144)
chr3 (156-274)||(50841709-50841828)
chr3 (185-274)||(22515686-22515776)
chr3 (156-274)||(46320452-46320571)
chr3 (203-274)||(20922830-20922901)
chr3 (203-274)||(49795013-49795083)
chr3 (194-266)||(9663968-9664039)
[»] chr4 (10 HSPs)
chr4 (156-274)||(43034186-43034304)
chr4 (156-274)||(50150373-50150491)
chr4 (186-274)||(30537687-30537775)
chr4 (156-274)||(25934359-25934477)
chr4 (186-274)||(3067776-3067864)
chr4 (186-274)||(782841-782930)
chr4 (156-274)||(26877181-26877300)
chr4 (185-274)||(36187366-36187456)
chr4 (187-266)||(27627802-27627882)
chr4 (192-274)||(33313285-33313367)
[»] chr2 (16 HSPs)
chr2 (156-274)||(10448737-10448855)
chr2 (156-274)||(22066432-22066550)
chr2 (157-274)||(11964170-11964287)
chr2 (156-274)||(41435665-41435783)
chr2 (156-270)||(21345139-21345252)
chr2 (156-274)||(39778708-39778827)
chr2 (156-274)||(10728349-10728468)
chr2 (156-274)||(36191631-36191750)
chr2 (156-274)||(13693586-13693704)
chr2 (156-274)||(42993862-42993981)
chr2 (194-274)||(7105610-7105690)
chr2 (203-274)||(25187004-25187075)
chr2 (156-271)||(41462684-41462800)
chr2 (156-274)||(10700280-10700399)
chr2 (185-266)||(19926849-19926931)
chr2 (185-274)||(28831005-28831095)
[»] chr8 (8 HSPs)
chr8 (156-274)||(13882104-13882222)
chr8 (186-274)||(8669782-8669870)
chr8 (156-262)||(29226295-29226400)
chr8 (156-274)||(32305726-32305845)
chr8 (156-274)||(37533785-37533903)
chr8 (203-274)||(35634847-35634918)
chr8 (156-274)||(8106912-8107030)
chr8 (203-274)||(42569968-42570039)
[»] chr5 (8 HSPs)
chr5 (156-274)||(21262954-21263072)
chr5 (185-274)||(33314376-33314465)
chr5 (156-274)||(40385291-40385412)
chr5 (186-274)||(3097607-3097695)
chr5 (160-269)||(41174722-41174831)
chr5 (156-274)||(24868485-24868604)
chr5 (85-131)||(29531858-29531904)
chr5 (203-271)||(4237918-4237986)
[»] chr1 (17 HSPs)
chr1 (156-274)||(27332995-27333113)
chr1 (185-274)||(1553763-1553853)
chr1 (156-274)||(35050361-35050479)
chr1 (156-274)||(16130020-16130139)
chr1 (156-274)||(16130570-16130689)
chr1 (156-274)||(5800493-5800611)
chr1 (156-274)||(30222711-30222829)
chr1 (185-260)||(35121218-35121293)
chr1 (156-274)||(9411746-9411865)
chr1 (156-266)||(27654624-27654735)
chr1 (156-274)||(45192629-45192747)
chr1 (185-266)||(40988131-40988213)
chr1 (189-266)||(36834287-36834364)
chr1 (203-264)||(34546716-34546776)
chr1 (223-274)||(13879110-13879161)
chr1 (203-274)||(23933375-23933446)
chr1 (220-274)||(27846418-27846472)
[»] chr6 (3 HSPs)
chr6 (156-274)||(1365663-1365782)
chr6 (156-274)||(24338068-24338187)
chr6 (156-274)||(7243472-7243591)
[»] scaffold0008 (1 HSPs)
scaffold0008 (156-274)||(258372-258491)
[»] scaffold0067 (1 HSPs)
scaffold0067 (203-274)||(6769-6840)
[»] scaffold0057 (1 HSPs)
scaffold0057 (204-274)||(30477-30547)
[»] scaffold0007 (1 HSPs)
scaffold0007 (88-131)||(216148-216191)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 23822274 - 23822116
Alignment:
Q  1 tttgttacaattaaataacttaaatgattttgtttgaaggaaaataacttaaatgatgtaagtggcacgnnnnnnnnnctctaaactaattgattactat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||         ||||||||||||||||||||||    
T  23822274 tttgttacaattaaataacttaaatgattttgtttgaaggaaaataacttaaatgatataagtggtacgaaaaaaaa-ctctaaactaattgattactat 23822176  T
Q  101 taaataacttaaatgacttctgatgtaatttggtaaaaaacaaattaaaagtaagttatt 160  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  23822175 taaataacttaaatgacttatgatgtaatttgattaaaaacaaattaaaagtaagttatt 23822116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 24989732 - 24989850
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  24989732 ttattagaaacaaaagtgagaatttttttggtcctttttattagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattg 24989831  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  24989832 attatgagagagaatatta 24989850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 8417677 - 8417795
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||     
T  8417677 ttattagaaacaaaagtgagaattttttttgtcctttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatta 8417776  T
Q  256 attatgagagagaatatta 274  Q
    ||||||||||| |||||||    
T  8417777 attatgagagataatatta 8417795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 7568315 - 7568235
Alignment:
Q  194 tataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| |||||||||||    
T  7568315 tataagaagattgatcaagtttcaagtatgtttgaaggtaaatttcatttgtgcccttatttattatgaaagagaatatta 7568235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 273
Target Start/End: Original strand, 18674552 - 18674639
Alignment:
Q  186 gtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatt 273  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||    
T  18674552 gtcctttttataagaaaattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattataagagagaatatt 18674639  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 23320103 - 23320032
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  23320103 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 23320032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 45062518 - 45062592
Alignment:
Q  200 aagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||||||||||||||| ||||||| ||||||||||||||  |||| ||| ||||||||||||||||||||||    
T  45062518 aagattgatcaagtttcaaatatgtttaaagctaaatttcatctgtgcccttgttgattatgagagagaatatta 45062592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 48390464 - 48390376
Alignment:
Q  187 tcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||  |||||| |||||||| ||||||||||    
T  48390464 tcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgtccttatttattatgagtgagaatatta 48390376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 41851142 - 41851071
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| ||||||||||||||||||||| |||||||||||| || | |||||| |||||||||||||||||||    
T  41851142 attgaccaagtttcaagtatgtttgaaactaaatttcatttgtacccttatttattatgagagagaatatta 41851071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 48394306 - 48394229
Alignment:
Q  186 gtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatga 262  Q
    ||||||| ||||||||  ||||| ||||||| ||||||||||||| |||||||||||| |||| |||||| |||||||    
T  48394306 gtcctttttataagaaatattgaccaagttttaagtatgtttgaaactaaatttcatttgtgcccttatttattatga 48394229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 54748009 - 54748127
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  54748009 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattg 54748108  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  54748109 attatgagagagaatatta 54748127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 25096161 - 25096043
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||    
T  25096161 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaaatttcaagtatgtttgaagctaaatttcatttgtgcccttattg 25096062  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  25096061 attatgagagagaatatta 25096043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 26848334 - 26848216
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    |||||| |||||||||||||||       |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  26848334 ttattataaacaaaagtgagaatttttttggtcatttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcttttgtgcccttattg 26848235  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  26848234 attatgagagagaatatta 26848216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 25313382 - 25313501
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  25313382 ttattagaaacaaaagtgagaattttttgggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 25313481  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  25313482 tattatgagagagaatatta 25313501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 35613194 - 35613075
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  35613194 ttattagaaacaaaagtgagaatttttttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 35613095  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  35613094 tattatgagagagaatatta 35613075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 48905770 - 48905690
Alignment:
Q  194 tataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||    
T  48905770 tataagaagattgaccaagtttcaagtatgtttgaaggtaaatttcatttgtgcccttatttattatgagagagaatatta 48905690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 23026461 - 23026342
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||| ||| ||||||||  |||||| || |||||||||||||||||| ||||||||||| |||| ||||||    
T  23026461 ttattagaaacaaaagtgagaatttttttggtcatttttataagaaatattgataaaatttcaagtatgtttgaagttaaatttcatttgtgcccttatt 23026362  T
Q  255 gattatgagagagaatatta 274  Q
    ||||||||||||||||||||    
T  23026361 gattatgagagagaatatta 23026342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 50834025 - 50834144
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||| ||||||||||||||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| |||| |    
T  50834025 ttattaggaacaaaagtgagaatttttttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttact 50834124  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  50834125 tattatgagagagaatatta 50834144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 50841828 - 50841709
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||| ||||||||||||||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| |||| |    
T  50841828 ttattaggaacaaaagtgagaatttttttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttact 50841729  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  50841728 tattatgagagagaatatta 50841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 22515686 - 22515776
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||| ||||||||  ||||| |||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  22515686 ggtcctttttataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 22515776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 46320452 - 46320571
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| || | ||||||    
T  46320452 ttattagaaacaaaagtgagaattttttaggtcctttttataagaaatattgaccaagttttaagtatgtttgaagttaaatttcatttgtacccttatt 46320551  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  46320552 tattatgagagagaatatta 46320571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 20922901 - 20922830
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  20922901 attgaccaagtttcaagtattcttgaagctaaatttcatttgtgctcttatttattatgagagagaatatta 20922830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 49795083 - 49795013
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||| |||||||    
T  49795083 attgatcaagtttcaagtatgtt-gaagctaaatttcatttgtactcttatttattatgagagaaaatatta 49795013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 9664039 - 9663968
Alignment:
Q  194 tataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagaga 266  Q
    |||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||||    
T  9664039 tataagaagattgaccaagtttcaag-atgtttgaaggtaaatttcatttgtgcccttatttattatgagaga 9663968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 43034304 - 43034186
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  43034304 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattg 43034205  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  43034204 attatgagagagaatatta 43034186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 50150491 - 50150373
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    |||||||||||||||| |||||       |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||    
T  50150491 ttattagaaacaaaagggagaatttttttggtcctttttataagaagattgatcaagttttaagtatgtttgaagctaaatttcatttgtgtccttattg 50150392  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  50150391 attatgagagagaatatta 50150373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 30537775 - 30537687
Alignment:
Q  186 gtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  30537775 gtcctttttataagaagattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 30537687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 25934359 - 25934477
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||        ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||     
T  25934359 ttattagaaacaaaagtgagaattttttttgtcctttttataagaagattgaccaagtttcaagtatgtttgaagataaatttcatttgtgcccttattt 25934458  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||| ||||    
T  25934459 attatgagagagaaaatta 25934477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 3067776 - 3067864
Alignment:
Q  186 gtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  3067776 gtcctttttataagaagattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaaaatta 3067864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 782841 - 782930
Alignment:
Q  186 gtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||    
T  782841 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcttttgtgcccttatttattatgagagagaatatta 782930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 26877181 - 26877300
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| ||| ||| |||||||||||||||||||||||||| |||  ||||||    
T  26877181 ttattagaaacaaaagtgagaatttttttggtcctttttataagaaatattgaccaaattttaagtatgtttgaagctaaatttcatttgtgtccttatt 26877280  T
Q  255 gattatgagagagaatatta 274  Q
     ||||||||| |||||||||    
T  26877281 tattatgagatagaatatta 26877300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 36187366 - 36187456
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||| ||||||||  ||| | |||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  36187366 ggtcctttttataagaaatattaaccaagtttcaagtatatttgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 36187456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 27627802 - 27627882
Alignment:
Q  187 tcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagaga 266  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  27627802 tcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagaga 27627882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 33313285 - 33313367
Alignment:
Q  192 tatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||||||||| | ||||||| || ||||||| ||  ||||||| ||| |||| |||||| |||||||||||||| ||||    
T  33313285 tatataagaagattaaccaagttttaaatatgtttaaatataaattttatttgtgcccttatttattatgagagagaaaatta 33313367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 10448737 - 10448855
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10448737 ttattagaaacaaaagtgagaatttttttggtcctctttataagaagattgatcaagtttcaagtatgtttgaagttaaatttcatttgtgctcttattg 10448836  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  10448837 attatgagagagaatatta 10448855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 22066550 - 22066432
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  22066550 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaagtttcaagtatgtttaaagctaaatttcatttgtgcccttattg 22066451  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  22066450 attatgagagagaatatta 22066432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 11964170 - 11964287
Alignment:
Q  157 tattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattga 256  Q
    |||||||||||||||||||||       |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  11964170 tattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattga 11964269  T
Q  257 ttatgagagagaatatta 274  Q
    ||||||||||||||||||    
T  11964270 ttatgagagagaatatta 11964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 41435783 - 41435665
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  41435783 ttattagaaacaaaagtgagaatttttttggtcctttttataataagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgcccttattg 41435684  T
Q  256 attatgagagagaatatta 274  Q
    ||||||||| |||||||||    
T  41435683 attatgagatagaatatta 41435665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 21345252 - 21345139
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  21345252 ttattagaaacaaaagtgagaatttttt-ggtcctttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgtccttattg 21345154  T
Q  256 attatgagagagaat 270  Q
    ||| |||||||||||    
T  21345153 attgtgagagagaat 21345139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 39778827 - 39778708
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||| ||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  39778827 ttattagaaacaaaagtgaaaatttttttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 39778728  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  39778727 tattatgagagagaatatta 39778708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 10728468 - 10728349
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  |||||  |||||||||||||||||||||||||||||||||  ||| ||||||    
T  10728468 ttattagaaacaaaagtgagaatttttttggtcctttttataagaaatattgacaaagtttcaagtatgtttgaagctaaatttcatttatgcccttatt 10728369  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  10728368 tattatgagagagaatatta 10728349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 36191750 - 36191631
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    |||||||||||||||||||||        |||||||| ||||||||  |||||  ||||||||||||||||||||||||||||||||| |||| ||||||    
T  36191750 ttattagaaacaaaagtgagattttttttggtcctttttataagaaatattgactaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 36191651  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  36191650 tattatgagagagaatatta 36191631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 13693704 - 13693586
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||||  ||  ||||||     
T  13693704 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgaccaagtttcaagtatgtttaaagataaatttcatttctgtccttattt 13693605  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||| ||||    
T  13693604 attatgagagagaaaatta 13693586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 42993981 - 42993862
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnn-ggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||        |||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||||||    
T  42993981 ttattagaaacaaaagtgagaattttttttggtcctttttataagaagattgaccaaatttcaagtatgtttgaagataaatttcatttgtgcccttatt 42993882  T
Q  255 gattatgagagagaatatta 274  Q
      ||||||||||||| ||||    
T  42993881 tgttatgagagagaaaatta 42993862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 7105610 - 7105690
Alignment:
Q  194 tataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||| |||| |||||| ||||||||||| |||||||    
T  7105610 tataagaagattgaccaagtttcaagtatgcttgaaggtaaatttcatttgtgcccttatttattatgagagaaaatatta 7105690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 25187004 - 25187075
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  25187004 attgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 25187075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 41462684 - 41462800
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| ||||||| || ||||||||||| ||||||||||| |||| ||||||    
T  41462684 ttattagaaacaaaagtgagaattttttaggtcctttttataagaaatattgaccaagttttaaatatgtttgaagttaaatttcatttgtgcccttatt 41462783  T
Q  255 gattatgagagagaata 271  Q
     ||||||||||||||||    
T  41462784 tattatgagagagaata 41462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 10700399 - 10700280
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||        ||| ||| ||||||||  ||||| |||||||||||||||| ||||||||||||||||| |||| |||| |    
T  10700399 ttattagaaacaaaagtgagaatttttttagtcttttttataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttact 10700300  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  10700299 tattatgagagagaatatta 10700280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 19926931 - 19926849
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagaga 266  Q
    |||||||| ||||||||  ||||| ||||||| ||||||||||||| |||||||||||| |||| |||||| |||||||||||    
T  19926931 ggtcctttttataagaaatattgaccaagttttaagtatgtttgaaactaaatttcatttgtgcccttatttattatgagaga 19926849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 28831005 - 28831095
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||| ||||||||  ||||| ||| ||| |||||||||||||| ||||||||||| |||  |||||| ||||||||||| |||||||    
T  28831005 ggtcctttttataagaaatattgaccaaattttaagtatgtttgaagttaaatttcatttgtgtccttatttattatgagagaaaatatta 28831095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 13882104 - 13882222
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    |||||||||| |||||||||||       |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  13882104 ttattagaaataaaagtgagaatttttttggtcctttttataagaagattgatcaagtttcaaatatgtttgaagctaaatttcatttgtgcccttattg 13882203  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  13882204 attatgagagagaatatta 13882222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 8669782 - 8669870
Alignment:
Q  186 gtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  8669782 gtcctttttataagaagattgatcaagtttcaagtatgtttgaagttaaatttcatttgtgcccttattgattatgagagagaatatta 8669870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 29226295 - 29226400
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  29226295 ttattagaaacaaaagtgagaatttttttgttcctttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgtgc-cttattg 29226393  T
Q  256 attatga 262  Q
    |||||||    
T  29226394 attatga 29226400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 32305726 - 32305845
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||| ||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  32305726 ttattagaaacaaaagtgaaaatttttttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 32305825  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  32305826 tattatgagagagaatatta 32305845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 37533785 - 37533903
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    |||||| |||||||||||||||       | |||||| ||| ||||||||||||||||||||| ||| ||||||| |||||||| || |||| |||||||    
T  37533785 ttattataaacaaaagtgagaatttttttgatcctttttattagaagattgatcaagtttcaaatatatttgaagttaaatttcgtttgtgcccttattg 37533884  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  37533885 attatgagagagaatatta 37533903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 35634918 - 35634847
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||    
T  35634918 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatatta 35634847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 8106912 - 8107030
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||| ||||||       | |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||     
T  8106912 ttattagaaacaaaaatgagaatttttttgatcctttttataagaagattgaccaagtttcaagtatgtttgaaactaaatttcatttgtgtccttattt 8107011  T
Q  256 attatgagagagaatatta 274  Q
    ||||||||| |||| ||||    
T  8107012 attatgagatagaaaatta 8107030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 42569968 - 42570039
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| ||||||| ||||||  |||||||||||||| ||| ||||  ||||| |||||||||||||||||||    
T  42569968 attgaccaagttttaagtatcattgaagctaaattttatttgtgcatttatttattatgagagagaatatta 42570039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 21263072 - 21262954
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||| ||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||    
T  21263072 ttattagaaacaaaagtgataatttttttggtcctttttataagaagattgatcaagtttcaagtatgtttgaagctaaatttcatttgcgcccatattg 21262973  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  21262972 attatgagagagaatatta 21262954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 33314376 - 33314465
Alignment:
Q  185 ggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||| |||||||||||||||||||    
T  33314376 ggtcctttttataagaagattgatcaagtttcaaatatgtttgaagctaaatttcatttgtgccctcatttattatgagagagaatatta 33314465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 40385412 - 40385291
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatat---aagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctctta 252  Q
    ||||||||||||||||||||||       |||||||| |||   ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  40385412 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagaagattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgccctta 40385313  T
Q  253 ttgattatgagagagaatatta 274  Q
    || |||||||||||||| ||||    
T  40385312 tttattatgagagagaaaatta 40385291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 3097695 - 3097607
Alignment:
Q  186 gtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| ||| ||||    
T  3097695 gtcctttttataagaagattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagtgaaaatta 3097607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 41174831 - 41174722
Alignment:
Q  160 tagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgatta 259  Q
    ||||||||||||||||||       |||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||| |||| |||||| ||||    
T  41174831 tagaaacaaaagtgagaatttttttggtcctttttataagaagattgaccaagtttcaagtatattttaagctaaatttcatttgtgcccttatttatta 41174732  T
Q  260 tgagagagaa 269  Q
    ||||||||||    
T  41174731 tgagagagaa 41174722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 24868485 - 24868604
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||        ||| ||| ||||||||  ||||| |||||||||||||||||||||| ||||||||||| || | ||||||    
T  24868485 ttattagaaacaaaagtgagaattttttttgtcttttttataagaaatattgaccaagtttcaagtatgtttgaagttaaatttcatttgtacccttatt 24868584  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  24868585 tattatgagagagaatatta 24868604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 29531904 - 29531858
Alignment:
Q  85 actaattgattactattaaataacttaaatgacttctgatgtaattt 131  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  29531904 actaatttattacaattaaataacttaaatgacatctcatgtaattt 29531858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 4237918 - 4237986
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaata 271  Q
    |||||| || ||||| | |||||||||| ||||||||||| ||||  ||||| ||||||||| ||||||    
T  4237918 attgataaattttcatggatgtttgaagttaaatttcatttgtgccgttatttattatgagatagaata 4237986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 27333113 - 27332995
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || | |||||||    
T  27333113 ttattagaaacaaaagtgagaatttttttggtcctttttataagaagattgatcaagttttaagtatgtttgaagctaaatttcatttgtacccttattg 27333014  T
Q  256 attatgagagagaatatta 274  Q
    ||||||||||| |||||||    
T  27333013 attatgagagaaaatatta 27332995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 1553763 - 1553853
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  1553763 ggtcctttttataagaagtattgatcaaatttcaagtatgtttgaagctaaatttcatttgtgcccttattgattatgagagagaatatta 1553853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 35050479 - 35050361
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       ||| |||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||  |||||||    
T  35050479 ttattagaaacaaaagtgagaatttttttggttctttttataaaaagatcgatcaagtttcaagtatgtctgaagctaaatttcatttgtgtccttattg 35050380  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||||||||    
T  35050379 attatgagagagaatatta 35050361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 16130139 - 16130020
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||| ||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  16130139 ttattagaaacaaaagtgaaaaaaaatttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 16130040  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  16130039 tattatgagagagaatatta 16130020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 16130689 - 16130570
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||| ||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  16130689 ttattagaaacaaaagtgaaaaaaaatttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 16130590  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  16130589 tattatgagagagaatatta 16130570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 5800611 - 5800493
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    |||||||||||||||||| |||       |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| |||  ||||||     
T  5800611 ttattagaaacaaaagtgggaatttttttggtcctttttataagaagattgaccaagtttcaagtatgtttgaagataaatttcatttgtgtccttattt 5800512  T
Q  256 attatgagagagaatatta 274  Q
    |||||||||||||| ||||    
T  5800511 attatgagagagaaaatta 5800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 30222711 - 30222829
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||| ||||||       | || ||| ||||||||||||||||||||||||| ||||||||| |||||| |||||| ||| ||||||||    
T  30222711 ttattagaaacaaaaatgagaatttttttgatcatttttataagaagattgatcaagtttcaaatatgtttgatgctaaaattcatttgtgttcttattg 30222810  T
Q  256 attatgagagagaatatta 274  Q
    ||||||| |||||||||||    
T  30222811 attatgaaagagaatatta 30222829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 35121218 - 35121293
Alignment:
Q  185 ggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattat 260  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||| |||||    
T  35121218 ggtcctttttataagaagattgaccaagtttcaagtatgtttgaagcaaaatttcatttgtgcccttatttattat 35121293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 9411746 - 9411865
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||| ||       |||||||| ||||||||  ||||| |||||||||||||| ||||||| ||||||||| | |||| ||||||    
T  9411746 ttattagaaacaaaagtgaaaatttttttggtcctttttataagaaatattgaccaagtttcaagtatatttgaagttaaatttcacttgtgcccttatt 9411845  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  9411846 tattatgagagagaatatta 9411865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 27654624 - 27654735
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||||||||||| |||||| ||||||| ||||||||||| |||| ||||||    
T  27654624 ttattagaaacaaaagtgagaatttttttggtcctttttataagaaatattgatcaagttttaagtatctttgaagttaaatttcatttgtgcccttatt 27654723  T
Q  255 gattatgagaga 266  Q
     |||||||||||    
T  27654724 tattatgagaga 27654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 45192747 - 45192629
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattg 255  Q
    ||||||||||||||||||||||       | |||||| ||||||||||||||| ||||||| | ||| ||| | |||||| |||||| ||| |||||||     
T  45192747 ttattagaaacaaaagtgagaatttttttgatcctttttataagaagattgattaagtttctaatattttttatgctaaaattcatttgtgttcttatta 45192648  T
Q  256 attatgagagagaatatta 274  Q
    ||||||||| |||||||||    
T  45192647 attatgagacagaatatta 45192629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 40988213 - 40988131
Alignment:
Q  185 ggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagaga 266  Q
    |||||||| ||||||||  ||||| ||||||| ||||||||||||| |||||||||||| |||| |||||| |||||||||||    
T  40988213 ggtcctttttataagaaatattgaccaagttttaagtatgtttgaaactaaatttcatttgtgcccttatttattatgagaga 40988131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 36834287 - 36834364
Alignment:
Q  189 ctttatataagaagattgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagaga 266  Q
    |||| |||||||| |||||| || |||||||||||||||||||||||||||||| || | |||||| ||||| |||||    
T  36834287 ctttttataagaaaattgattaaatttcaagtatgtttgaagctaaatttcatttgtacccttatttattataagaga 36834364  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 34546716 - 34546776
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgaga 264  Q
    ||||||||||||| |||||||||||||||| |||||||||  ||| |||||| |||||||||    
T  34546716 attgatcaagttttaagtatgtttgaagct-aatttcatttctgcccttatttattatgaga 34546776  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 13879161 - 13879110
Alignment:
Q  223 gtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||| ||||||||||||||| |||| |||||| ||||||||| |||||||||    
T  13879161 gtttaaagctaaatttcatttgtgcccttatttattatgagatagaatatta 13879110  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 23933446 - 23933375
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| ||| |||||| | ||||||||| ||||||||||| |||| |||||| |||||  ||||||||||||    
T  23933446 attgaccaattttcaaatgtgtttgaagttaaatttcatttgtgcccttatttattatatgagagaatatta 23933375  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 27846418 - 27846472
Alignment:
Q  220 tatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||||||||| ||||||||||| || | |||||| ||||||||||| |||||||    
T  27846418 tatgtttgaagttaaatttcatttgtacccttatttattatgagagataatatta 27846472  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 1365663 - 1365782
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  1365663 ttattagaaacaaaagtgagaattttgttggtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 1365762  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  1365763 tattatgagagagaatatta 1365782  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 24338187 - 24338068
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||| ||| ||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  24338187 ttattagaaacaaaagtgagaatttttttggtcttttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatt 24338088  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  24338087 tattatgagagagaatatta 24338068  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 7243591 - 7243472
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    |||||| |||||||||||||||       |||| ||| ||||||||  ||||| |||||||||||||||||||||| ||||||||||| |||| ||||||    
T  7243591 ttattataaacaaaagtgagaacttttttggtcttttttataagaaatattgaccaagtttcaagtatgtttgaagttaaatttcatttgtgcccttatt 7243492  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  7243491 tattatgagagagaatatta 7243472  T

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Target: scaffold0008 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 258491 - 258372
Alignment:
Q  156 ttattagaaacaaaagtgagaannnnnnnggtcctttatataagaag-attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttatt 254  Q
    ||||||||||||||||||||||       |||||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| ||||  |||||    
T  258491 ttattagaaacaaaagtgagaattttttaggtcctttttataagaaatattgaccaagttttaagtatgtttgaagttaaatttcatttgtgcctttatt 258392  T
Q  255 gattatgagagagaatatta 274  Q
     |||||||||||||||||||    
T  258391 tattatgagagagaatatta 258372  T

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Target: scaffold0067 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 6769 - 6840
Alignment:
Q  203 attgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||    
T  6769 attgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcgcttatttattatgagaaagaatatta 6840  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 30477 - 30547
Alignment:
Q  204 ttgatcaagtttcaagtatgtttgaagctaaatttcattcgtgctcttattgattatgagagagaatatta 274  Q
    |||| ||| |||||||| ||||||||  ||||||||||| |||| |||||| ||||||||||| |||||||    
T  30477 ttgaccaattttcaagtttgtttgaaattaaatttcatttgtgcccttatttattatgagagacaatatta 30547  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 216148 - 216191
Alignment:
Q  88 aattgattactattaaataacttaaatgacttctgatgtaattt 131  Q
    ||||| |||| |||||||||||||||||| ||||||||||||||    
T  216148 aattggttacaattaaataacttaaatgatttctgatgtaattt 216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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