View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_22 (Length: 284)
Name: NF4227_low_22
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 62 - 265
Target Start/End: Complemental strand, 12508818 - 12508615
Alignment:
| Q |
62 |
ttatgtctggaactgaagctacaaaatatgcttctgctacaaacaacataaccaaatcnnnnnnnccaaacatgagaagattcattggtgtgagacaaag |
161 |
Q |
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| T |
12508818 |
ttatgtctggaactgaagctacaaaatatgcttctgctacaaacaacataaccaaatcaaaaaaaccgaacatgagaagattcattggtgtgagacaaag |
12508719 |
T |
|
| Q |
162 |
gccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508718 |
gccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttac |
12508619 |
T |
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| Q |
262 |
gacg |
265 |
Q |
| |
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|||| |
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| T |
12508618 |
gacg |
12508615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 3160220 - 3160268
Alignment:
| Q |
146 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaaga |
194 |
Q |
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| T |
3160220 |
ttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaaga |
3160268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 33274393 - 33274279
Alignment:
| Q |
146 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga |
245 |
Q |
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||||||| || |||||||||||||| |||||||||||||||||||||||| || |||| | ||||| | ||||||||||| | ||| ||| | || || |
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| T |
33274393 |
ttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga |
33274294 |
T |
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| Q |
246 |
agctgctcgagctta |
260 |
Q |
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||| ||| ||||||| |
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| T |
33274293 |
agcagctagagctta |
33274279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 46024054 - 46024103
Alignment:
| Q |
151 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
200 |
Q |
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| T |
46024054 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46024103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 46265313 - 46265264
Alignment:
| Q |
151 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
200 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
46265313 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46265264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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