View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_low_25 (Length: 274)

Name: NF4227_low_25
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_low_25
NF4227_low_25
[»] chr4 (11 HSPs)
chr4 (20-241)||(40283711-40283932)
chr4 (147-231)||(23494283-23494368)
chr4 (126-208)||(8019718-8019801)
chr4 (179-239)||(48831619-48831683)
chr4 (174-236)||(25856977-25857038)
chr4 (126-208)||(8020164-8020246)
chr4 (179-226)||(21517384-21517431)
chr4 (179-226)||(21518406-21518453)
chr4 (144-235)||(56094380-56094470)
chr4 (204-237)||(24194911-24194944)
chr4 (144-232)||(42679191-42679278)
[»] chr5 (13 HSPs)
chr5 (28-238)||(15088972-15089185)
chr5 (122-241)||(12920283-12920400)
chr5 (60-225)||(4241443-4241610)
chr5 (60-241)||(34367273-34367456)
chr5 (60-241)||(4248823-4249003)
chr5 (202-241)||(17053557-17053596)
chr5 (179-237)||(5552605-5552663)
chr5 (128-238)||(40138531-40138643)
chr5 (179-232)||(994890-994942)
chr5 (201-238)||(8822504-8822541)
chr5 (29-69)||(4249315-4249355)
chr5 (27-67)||(10099822-10099862)
chr5 (203-235)||(16600580-16600612)
[»] chr1 (11 HSPs)
chr1 (60-239)||(24755022-24755195)
chr1 (139-223)||(42669124-42669209)
chr1 (144-235)||(31165617-31165707)
chr1 (149-234)||(15183875-15183959)
chr1 (150-238)||(46798397-46798483)
chr1 (172-241)||(23532891-23532960)
chr1 (172-232)||(51062078-51062139)
chr1 (144-239)||(52650644-52650740)
chr1 (144-235)||(35307251-35307341)
chr1 (203-235)||(27458299-27458331)
chr1 (182-241)||(47763239-47763299)
[»] chr2 (10 HSPs)
chr2 (54-241)||(11862106-11862297)
chr2 (150-223)||(25319118-25319191)
chr2 (144-222)||(35436210-35436287)
chr2 (174-235)||(83570-83630)
chr2 (201-232)||(7889403-7889434)
chr2 (179-237)||(10019620-10019678)
chr2 (162-235)||(18077363-18077437)
chr2 (179-236)||(33428792-33428848)
chr2 (180-237)||(35716645-35716702)
chr2 (179-235)||(7401067-7401123)
[»] chr8 (9 HSPs)
chr8 (87-241)||(4187205-4187360)
chr8 (144-237)||(1228941-1229035)
chr8 (150-234)||(9550693-9550777)
chr8 (129-235)||(35749059-35749165)
chr8 (132-208)||(28451913-28451990)
chr8 (182-235)||(29029115-29029168)
chr8 (162-235)||(32350818-32350890)
chr8 (162-235)||(32367479-32367551)
chr8 (179-235)||(26600870-26600925)
[»] chr6 (3 HSPs)
chr6 (162-235)||(18130600-18130673)
chr6 (162-236)||(23888264-23888338)
chr6 (144-235)||(11751788-11751878)
[»] chr3 (7 HSPs)
chr3 (66-237)||(10856309-10856473)
chr3 (179-241)||(17549876-17549939)
chr3 (179-241)||(29491090-29491152)
chr3 (172-230)||(30676359-30676417)
chr3 (202-241)||(20524581-20524620)
chr3 (122-231)||(49292115-49292224)
chr3 (174-241)||(33282675-33282739)
[»] scaffold0001 (1 HSPs)
scaffold0001 (144-235)||(508077-508167)
[»] chr7 (8 HSPs)
chr7 (28-83)||(25576296-25576351)
chr7 (198-241)||(30738482-30738525)
chr7 (126-241)||(43230753-43230863)
chr7 (202-236)||(33763127-33763161)
chr7 (182-235)||(30053934-30053986)
chr7 (150-235)||(33407136-33407220)
chr7 (174-235)||(34595923-34595983)
chr7 (88-160)||(25576135-25576207)
[»] scaffold0100 (1 HSPs)
scaffold0100 (179-237)||(39338-39396)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 40283711 - 40283932
Alignment:
Q  20 ctaggtttctttaagtttaacgtttgtatctgattagtccttttagttttaaattggtcctttaggtcgtaaaagtgaacgagttagtccttcattttta 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40283711 ctaggtttctttaagtttgacgtttgtatctgattagtccttttagttttaaattggtcctttaggtcgtaaaagtgaacgagttagtcctttattttta 40283810  T
Q  120 tcttgcaacaaattgatctctttcttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacac 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283811 ttttgcaacaaattgatctctttcttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacac 40283910  T
Q  220 caaacatgattacttacataca 241  Q
    ||||||||||||||||||||||    
T  40283911 caaacatgattacttacataca 40283932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 23494368 - 23494283
Alignment:
Q  147 atccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgatta 231  Q
    |||||||||||||| |||||||||| |||||  |||||||| |||||||||| |||||||| |||||||| ||| |||||||||||    
T  23494368 atccaactttgttaaaaagtgcttacatgactatttaacatcgaggtggaagatccaaaaaatgtttatggcacgaaacatgatta 23494283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 8019801 - 8019718
Alignment:
Q  126 aacaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagt 208  Q
    ||||||||||||  ||| ||||| ||||||||||| |||||| ||| |||| |||||||||||||| ||||| |||||||||||    
T  8019801 aacaaattgatccattttttcattcaactttgttaaaaagtgtttacatgatcttttaacattgagttggaacgtccaaaaagt 8019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 48831619 - 48831683
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgt----ttatgacaccaaacatgattacttacata 239  Q
    ||||||||||||||| ||||||||||||||||    |||||| ||||||||||||||||||||||    
T  48831619 tttaacattgaggtgaaaggtccaaaaagtgtttaattatgataccaaacatgattacttacata 48831683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 25856977 - 25857038
Alignment:
Q  174 gaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttac 236  Q
    |||| |||||||||||||||| || |||||||| ||||||||||| |||||||||||| ||||    
T  25856977 gaccatttaacattgaggtggtagatccaaaaa-tgtttatgacatcaaacatgattatttac 25857038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 8020246 - 8020164
Alignment:
Q  126 aacaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagt 208  Q
    ||||||||||||  ||| ||||| ||||||||||| |||||| ||| |||| |||||||||||||| | ||| |||||||||||    
T  8020246 aacaaattgatcatttt-ttcattcaactttgttaaaaagtgtttacatgatcttttaacattgagttagaacgtccaaaaagt 8020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 21517384 - 21517431
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacat 226  Q
    |||| ||||||||| |||||| ||| ||||||||||||||||||||||    
T  21517384 tttaccattgaggtagaaggttcaacaagtgtttatgacaccaaacat 21517431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 21518406 - 21518453
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacat 226  Q
    |||| ||||||||| |||||| ||| ||||||||||||||||||||||    
T  21518406 tttaccattgaggtagaaggttcaacaagtgtttatgacaccaaacat 21518453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 56094470 - 56094380
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| |||||||  ||| || |||||||  |||| ||||||||| || ||| |||| ||||| |||||||||||| ||||||||||||||||    
T  56094470 ttcagccaacttcattaaaatgtgcttatagaccatttaacattaagatggtaggttcaaaa-gtgtttatgacatcaaacatgattactta 56094380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 24194911 - 24194944
Alignment:
Q  204 aaagtgtttatgacaccaaacatgattacttaca 237  Q
    ||||||||||||||| ||||||||||||||||||    
T  24194911 aaagtgtttatgacatcaaacatgattacttaca 24194944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 42679191 - 42679278
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattac 232  Q
    |||| ||||||| |||| |||||| |||  |||| ||||||||| || | | |||||||||| |||||||| ||| |||||||||||||    
T  42679191 ttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatagtaggtccaaaa-gtgtttataacatcaaacatgattac 42679278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 15088972 - 15089185
Alignment:
Q  28 ctttaagtttaacgtttgtatctgattagtccttttagttttaaattggtcctttaggtcgtaaaagtgaacgagttagtccttcatttttatc--ttgc 125  Q
    |||||||||| |||||| |||| |||||| ||||||||||| ||||||||||||||  | |||||||||| | ||||||||||| | |||| |   ||      
T  15088972 ctttaagtttgacgtttctatcagattagcccttttagtttcaaattggtcctttatttagtaaaagtgagcaagttagtccttaactttttttgtttat 15089071  T
Q  126 aacaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaac 224  Q
    ||||||||| || || | |||||||| |||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||     
T  15089072 aacaaattggtccctcttttcatccagctttgttaaaaagcacttacatgaccatttaacattgaggtggaaggtccaaaaagcgtttatgacactaaat 15089171  T
Q  225 atgattacttacat 238  Q
    ||||||||||||||    
T  15089172 atgattacttacat 15089185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 12920283 - 12920400
Alignment:
Q  122 ttgcaacaaattgatctctttcttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacacca 221  Q
    ||||||||||||||| | |||  | |||||||||||||| |||||| |||| |||| ||||||||||||||  |||||||||||||| |||||||  |||    
T  12920283 ttgcaacaaattgattttttttct-atccaactttgttaaaaagtg-ttaaagaccatttaacattgaggtaaaaggtccaaaaagtctttatgatgcca 12920380  T
Q  222 aacatgattacttacataca 241  Q
    ||||||||||||||||||||    
T  12920381 aacatgattacttacataca 12920400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 4241443 - 4241610
Alignment:
Q  60 ttttagttttaaattggtcctttaggtc-gtaaaagtgaacgagttagtccttcatttttatcttgcaacaaattgatctctttcttcatccaactttgt 158  Q
    |||| |||||||||| |||||||| ||| ||| |||||| |  |||||||||| | || | | ||| ||||||||||||  ||| ||||| |||||||||    
T  4241443 tttttgttttaaattagtcctttatgtcagtacaagtgagcatgttagtcctttaattattttttgtaacaaattgatccattttttcatacaactttgt 4241542  T
Q  159 tataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaaca 225  Q
    || ||||| |||| |||||| |||||||||||||| ||| |||||||||||||||  |||| ||||||    
T  4241543 taaaaagttcttacatgaccatttaacattgaggtcgaatgtccaaaaagtgtttccgacatcaaaca 4241610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 34367456 - 34367273
Alignment:
Q  60 ttttagttttaaattggtcctttaggtc-gtaaaagtgaacgagttagtccttcattt--ttatcttgcaacaaattgatctctttcttcatccaacttt 156  Q
    ||||||||| |||| ||||||||| ||| ||||| ||||||  |||||||||| | ||  || | ||| |||||||| ||   ||| ||||| |||||||    
T  34367456 ttttagtttcaaataggtcctttatgtcagtaaatgtgaacaggttagtcctttaattattttttttgtaacaaattcatacattttttcatacaacttt 34367357  T
Q  157 gttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||| |||||||||| |||||  | ||| |||||||||||| ||||||||| ||||  ||| ||||||||| |||||||| |||||    
T  34367356 gttaaaaagtgcttacatgactatgtaaaattgaggtggaatgtccaaaaaatgtt--tgagaccaaacataattacttatataca 34367273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 241
Target Start/End: Original strand, 4248823 - 4249003
Alignment:
Q  60 ttttagttttaaattggtcctttaggtcg-taaaagtgaacgagttagtccttcatttttatcttgcaacaaattgatctctttcttcatccaactttgt 158  Q
    |||||||||||||||| || |||| |||| ||||||| ||| ||||||||||| | ||   | ||| ||||||||||||| ||| ||||| |||||||||    
T  4248823 ttttagttttaaattgatcttttatgtcggtaaaagtaaacaagttagtcctttaattaatttttgtaacaaattgatctattt-ttcatacaactttgt 4248921  T
Q  159 tataaag----tgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    || |||     |||||| |||||| ||||||| |||      | ||||||||||||||||||||||||||||| |||| ||| |||||    
T  4248922 taaaaaaacattgcttacatgaccatttaacactga------atgtccaaaaagtgtttatgacaccaaacataattatttatataca 4249003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 17053557 - 17053596
Alignment:
Q  202 aaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  17053557 aaaaagtgtttatgacacaaaacatgattacttacataca 17053596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 5552663 - 5552605
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
    |||||||||||||| | | ||| ||||||||||||||||| |||||||||||| |||||    
T  5552663 tttaacattgaggttgcatgtctaaaaagtgtttatgacaacaaacatgattaattaca 5552605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 40138643 - 40138531
Alignment:
Q  128 caaattgatctctttcttcatccaactttgttataaa--gtg-cttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaac 224  Q
    |||||||||| |||| ||||| ||||||||||| |||  ||| || ||||| | ||||||||||||||||||| |  ||||| |||||||||||| ||||    
T  40138643 caaattgatc-cttttttcattcaactttgttaaaaaaagtgtctaaatgatcatttaacattgaggtggaagatttaaaaattgtttatgacacaaaac 40138545  T
Q  225 atgattacttacat 238  Q
    | |||||| |||||    
T  40138544 acgattacatacat 40138531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 994942 - 994890
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattac 232  Q
    ||||||||||| |||| |||| ||||| |||||||||||| |||||||||||||    
T  994942 tttaacattgatgtggtaggttcaaaa-gtgtttatgacatcaaacatgattac 994890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 8822541 - 8822504
Alignment:
Q  201 caaaaagtgtttatgacaccaaacatgattacttacat 238  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  8822541 caaaaagtgtttatgacatcaaacataattacttacat 8822504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 4249355 - 4249315
Alignment:
Q  29 tttaagtttaacgtttgtatctgattagtccttttagtttt 69  Q
    ||||||||||| ||||||||| ||||| |||||||||||||    
T  4249355 tttaagtttaaagtttgtatcagattaatccttttagtttt 4249315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 10099862 - 10099822
Alignment:
Q  27 tctttaagtttaacgtttgtatctgattagtccttttagtt 67  Q
    |||||||||||||||||||||||  ||| ||||||||||||    
T  10099862 tctttaagtttaacgtttgtatcgaatttgtccttttagtt 10099822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 16600612 - 16600580
Alignment:
Q  203 aaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||||||||| ||||||||||||||||    
T  16600612 aaaagtgtttatgacatcaaacatgattactta 16600580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 239
Target Start/End: Complemental strand, 24755195 - 24755022
Alignment:
Q  60 ttttagttttaaattggtcctttaggtc-gtaaaagtgaacgagttagtccttcatttttatcttgcaacaaattgatctctttcttcatccaactttgt 158  Q
    ||||||||| |||||||||||||| ||| |||||||||||| |||||||||||        | ||| | ||||||| || |||| |||||||||||||||    
T  24755195 ttttagtttcaaattggtcctttatgtctgtaaaagtgaacaagttagtcctt--------ttttgtatcaaattggtcccttttttcatccaactttgt 24755104  T
Q  159 tataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacata 239  Q
    || |||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24755103 taaaaagtgcttacatggccatttaacattgaggtagaaggtccaaaaagtgtttatgacaccaaacatgactacttacata 24755022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 42669209 - 42669124
Alignment:
Q  139 ctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaa 223  Q
    |||| ||||||||||||||||  |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  42669209 cttttttcatccaactttgttcaaaagtgcttacatgaccatttaacgttgaggtggaaggtccaaaaagtgtttatgacaccaaa 42669124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 31165617 - 31165707
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||||| |||| || |||||||  |||| ||||||||| || ||| |||||| ||||||| |||||||| ||||||||||||||||    
T  31165617 ttcatccaacttcgttaaaacgtgcttatagaccatttaacattaagatggtaggtcc-aaaagtgcttatgacatcaaacatgattactta 31165707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 15183959 - 15183875
Alignment:
Q  149 ccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactt 234  Q
    ||||||| |||| ||||||||||  |||| ||||||||| || ||| |||||||||| ||| |||||||| |||||||||||||||    
T  15183959 ccaacttcgttaaaaagtgcttatagaccatttaacattaagatggtaggtccaaaa-gtgcttatgacatcaaacatgattactt 15183875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 46798483 - 46798397
Alignment:
Q  150 caactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacat 238  Q
    ||||||||||| ||||||||||   ||| |||||||||||| ||| || || ||||  ||||||||||| |||||||||||||||||||    
T  46798483 caactttgttagaaagtgcttatgaaccatttaacattgagttggtagttcaaaaa--tgtttatgacatcaaacatgattacttacat 46798397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 23532960 - 23532891
Alignment:
Q  172 atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||| ||||| ||||||||| |   |||||||| || |||||||||||||||| ||||||||||||||    
T  23532960 atgaccatttaatattgaggtgaattatccaaaaaatgcttatgacaccaaacataattacttacataca 23532891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 51062078 - 51062139
Alignment:
Q  172 atgaccttttaacattgaggtggaaggtccaaaaa-gtgtttatgacaccaaacatgattac 232  Q
    |||||| |||||||||||| || |||||||||||| || ||||||||| |||||||||||||    
T  51062078 atgaccatttaacattgagatgaaaggtccaaaaaggtatttatgacatcaaacatgattac 51062139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 52650644 - 52650740
Alignment:
Q  144 ttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacata 239  Q
    ||||||||||||||||| ||||| |||| |||||  ||||||||||||||| || | ||  |||||||||||| | ||||| ||| ||| |||||||    
T  52650644 ttcatccaactttgttaaaaagtccttacatgactatttaacattgaggtgaaatgcccccaaagtgtttatggccccaaatatggttaattacata 52650740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 35307341 - 35307251
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| ||||||| |||| |||||| |||  || | ||||||||| || ||| |||||||||| |||||| ||||| ||||||||||||||||    
T  35307341 ttcagccaacttcgttaaaaagtgtttatagatcatttaacattaagatggtaggtccaaaa-gtgtttttgacatcaaacatgattactta 35307251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 27458299 - 27458331
Alignment:
Q  203 aaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||||||||| ||||||||||||||||    
T  27458299 aaaagtgtttatgacatcaaacatgattactta 27458331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 47763299 - 47763239
Alignment:
Q  182 aacattgagg-tggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||||||| ||||||||| |||  ||||||| |||||||| |||||||||||| |||||    
T  47763299 aacattgagggtggaaggtcgaaagtgtgtttacgacaccaatcatgattacttaaataca 47763239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 11862106 - 11862297
Alignment:
Q  54 tagtccttttagttttaaattggtcctttaggtc-gtaaaagtgaacgagttagtccttcatttttatcttgc-aacaaattgatctctttcttcatcca 151  Q
    |||| |||||||||| |||||||||||||| ||| |||||||||||| | ||| ||||| ||| || | |||  ||||||||  |  |||| ||||||||    
T  11862106 tagttcttttagtttcaaattggtcctttatgtcagtaaaagtgaacaacttaatcctttattatttttttggtaacaaattagttccttttttcatcca 11862205  T
Q  152 actttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgaca-ccaaacatgattacttacataca 241  Q
    ||||  ||| |||||||| | || ||| |||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||    
T  11862206 acttccttaaaaagtgctcacataaccatttaacattggggtggaaggtccaaaaagtgttaatgatacccaaacatgattacttacataca 11862297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 25319191 - 25319118
Alignment:
Q  150 caactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaa 223  Q
    ||||||||||| ||| || ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  25319191 caactttgttaaaaaatgattatatgaccatttaacattgaggtggaaggt-caaaaagtgtttatgacaccaaa 25319118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 35436210 - 35436287
Alignment:
Q  144 ttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaa 222  Q
    ||||||||||||||||| ||| || ||| |||||| ||||||||| |||||||||||||||||  |||| ||||||||||    
T  35436210 ttcatccaactttgttaaaaaatgtttacatgaccatttaacattaaggtggaaggtccaaaa--tgttgatgacaccaa 35436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 83570 - 83630
Alignment:
Q  174 gaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| |||||||||||||||| |||||| ||||||||||||| || ||||||||||| ||||    
T  83570 gaccatttaacattgaggtggtaggtcc-aaaagtgtttatgtcatcaaacatgattgctta 83630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 7889434 - 7889403
Alignment:
Q  201 caaaaagtgtttatgacaccaaacatgattac 232  Q
    ||||||||||||||||||||||||||||||||    
T  7889434 caaaaagtgtttatgacaccaaacatgattac 7889403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 10019620 - 10019678
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
    |||||| ||||||||  | ||||||||||||||||| || ||||||||| |||||||||    
T  10019620 tttaactttgaggtgctaagtccaaaaagtgtttattactccaaacatggttacttaca 10019678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 18077363 - 18077437
Alignment:
Q  162 aaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||| |||||  ||||| |||||  |||||||||||||| || |||| |||||||||||||||| ||||    
T  18077363 aaagtgcttacatgacgatttaaaattgacatggaaggtccaaaacgtttttaagacaccaaacatgatttctta 18077437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 33428792 - 33428848
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttac 236  Q
    |||||||||||||||| | || ||||| |||||||||||| |||| ||||||||||||    
T  33428792 tttaacattgaggtggtatgttcaaaa-gtgtttatgacatcaaatatgattacttac 33428848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 35716702 - 35716645
Alignment:
Q  180 ttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
    ||||||||||| ||  | |||||||||||||||||||||  ||| |||||||||||||    
T  35716702 ttaacattgagatgacaagtccaaaaagtgtttatgacataaaaaatgattacttaca 35716645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 7401067 - 7401123
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||||| ||||| |||||||||||| ||||||| |  ||||| ||||||||    
T  7401067 tttaacattgagatggaaagtccaaaaagtggttatgaccctgaacataattactta 7401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 4187205 - 4187360
Alignment:
Q  87 cgtaaaagtgaacgagttagtccttcatttttatctt-gcaacaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaac 184  Q
    ||||||||||||| |||| |||||| | ||| || || | || ||||||||   ||| |||||| |||||||||| ||| || ||| |||| | ||||||    
T  4187205 cgtaaaagtgaacaagttggtcctttagtttaatttttgtaataaattgattaattttttcatctaactttgttaaaaa-tgtttacatgatcatttaac 4187303  T
Q  185 attgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  4187304 attgaggtggaaggtccaattagtgtttatgacatcaaacatgattacttacataca 4187360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 1228941 - 1229035
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaa-tgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
    ||||| ||||||||||| |||||| |||| ||||| |||||||||| ||| ||||||||||||||| ||||||| |||||||||||| |||||||    
T  1228941 ttcattcaactttgttaaaaagtgtttaaatgaccatttaacattgcggtagaaggtccaaaaagtatttatgataccaaacatgatcacttaca 1229035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 9550777 - 9550693
Alignment:
Q  150 caactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactt 234  Q
    ||||||||||| |||||| ||| |||||| |||||||||||||||||||||  ||||| | ||||||||||||||||| |||||||    
T  9550777 caactttgttaaaaagtgattatatgaccatttaacattgaggtggaaggt-taaaaaatatttatgacaccaaacataattactt 9550693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 35749165 - 35749059
Alignment:
Q  129 aaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatg 227  Q
    ||||||||| |||| |||||||||||||| || |||||||||| |||| | ||||||||||| ||  || || |||| ||||||||||| ||||||||||    
T  35749165 aaattgatc-cttttttcatccaactttggtaaaaagtgcttacatgatcatttaacattgatgtcaaaagttcaaagagtgtttatgataccaaacatg 35749067  T
Q  228 attactta 235  Q
    ||| ||||    
T  35749066 atttctta 35749059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 28451913 - 28451990
Alignment:
Q  132 ttgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagt 208  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||  |||||| ||| |||||||| | ||||||||    
T  28451913 ttgatctgttttttcatacaactttgttataaagtgcttatatgactatttaaccttgtggtggaagattcaaaaagt 28451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 29029168 - 29029115
Alignment:
Q  182 aacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||| |||||||||||||||||| | ||||| |||| |||||||||||||||    
T  29029168 aacattaaggtggaaggtccaaaaaatatttataacacaaaacatgattactta 29029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 32350818 - 32350890
Alignment:
Q  162 aaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    ||||||||||  |||| ||||||||| || ||  ||||| |||| |||||||||||| ||||||||||||||||    
T  32350818 aaagtgcttatagaccatttaacattaagatgataggtctaaaa-gtgtttatgacatcaaacatgattactta 32350890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 32367479 - 32367551
Alignment:
Q  162 aaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    ||||||||||  |||| ||||||||| || ||  ||||| |||| |||||||||||| ||||||||||||||||    
T  32367479 aaagtgcttatagaccatttaacattaagatgataggtctaaaa-gtgtttatgacatcaaacatgattactta 32367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 26600870 - 26600925
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    ||||||||| || ||| |||||||||| ||| |||||||| ||||||||||||||||    
T  26600870 tttaacattaagatggtaggtccaaaa-gtgcttatgacatcaaacatgattactta 26600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 18130673 - 18130600
Alignment:
Q  162 aaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  18130673 aaagtgcttacatgacctcttaacattgaggtggtag-tccaaaaagtgcttatgacaccaaacatgattactta 18130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 23888338 - 23888264
Alignment:
Q  162 aaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttac 236  Q
    |||||||||| ||||||| ||||||||||||||  || ||||||||||| ||||||||||||||||||||||||||    
T  23888338 aaagtgcttacatgacctcttaacattgaggtgctag-tccaaaaagtgcttatgacaccaaacatgattacttac 23888264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 11751788 - 11751878
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| ||||||| |||| |||||| |||  |||| ||||||||| || ||| |||||||||| |||||||||||| |||||| |||||||||    
T  11751788 ttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaa-gtgtttatgacatcaaacacgattactta 11751878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 10856473 - 10856309
Alignment:
Q  66 ttttaaattggtcctttaggtc-gtaaaagtgaacgagttagtccttcatttttatcttgcaacaaattgatctctttcttcatccaactttgttataaa 164  Q
    ||||||||||||| |||  ||| |||||||| ||| ||||||||||| | |||||| ||| | ||||| |||| |||| |||||||||||| |||| |||    
T  10856473 ttttaaattggtcttttgtgtcagtaaaagtaaacaagttagtcctttaattttatattgaatcaaatggatcccttttttcatccaacttcgttaaaaa 10856374  T
Q  165 gtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
           | |||| |||||||||||| ||||||||||||||| | |||||||| |||||||||| ||||||||    
T  10856373 -------acgaccatttaacattgag-tggaaggtccaaaaactatttatgaccccaaacatgaatacttaca 10856309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 17549939 - 17549876
Alignment:
Q  179 tttaacattgaggtggaaggtccaaa-aagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||| | ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  17549939 tttaacttagaggtggaaggtccaaagaagtttttatgacaccaaacgtgattacttacataca 17549876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 29491152 - 29491090
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    ||||||||||| |||||| || ||||||||| ||| |||||||||| ||||||||||||||||    
T  29491152 tttaacattgaagtggaatgtacaaaaagtggttacgacaccaaacgtgattacttacataca 29491090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 30676359 - 30676417
Alignment:
Q  172 atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgatt 230  Q
    |||||| || |||||||| ||||||||| |||||||||||||||||| |||||| ||||    
T  30676359 atgaccattaaacattgaagtggaaggttcaaaaagtgtttatgacaacaaacacgatt 30676417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 20524620 - 20524581
Alignment:
Q  202 aaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  20524620 aaaaagtgtttatgacacataacatgattacttacataca 20524581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 49292115 - 49292224
Alignment:
Q  122 ttgcaacaaattgatctctttcttcatccaactttgttataaagtgcttaatgac-cttttaacattgaggtggaaggtccaaaaagtgtttatgacacc 220  Q
    ||||||||| |||||| |||| ||| || |||||||||  |||||||||||  |  | |||||||||||||| ||||||| |||||  |||||| |||||    
T  49292115 ttgcaacaagttgatc-cttttttcttctaactttgttgaaaagtgcttaagcaatcatttaacattgaggtagaaggtctaaaaaccgtttataacacc 49292213  T
Q  221 aaacatgatta 231  Q
    |||||| ||||    
T  49292214 aaacataatta 49292224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 33282675 - 33282739
Alignment:
Q  174 gaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||| ||| |||||||||||| |||||| |||   || ||||||| ||||||||||||||||||||||    
T  33282675 gaccatttgacattgaggtggtaggtccgaaa---gtatatgacatcaaacatgattacttacataca 33282739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 508077 - 508167
Alignment:
Q  144 ttcatccaactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| ||||||| |||| |||||| |||  |||| |||||| || || ||| ||||||||||| ||||||||||| ||||||||||||||||    
T  508077 ttcagccaacttcgttaaaaagtgtttatagaccatttaacgttaagatggtaggtccaaaaa-tgtttatgacatcaaacatgattactta 508167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 25576351 - 25576296
Alignment:
Q  28 ctttaagtttaacgtttgtatctgattagtccttttagttttaaattggtccttta 83  Q
    |||||||||||||||||||| | |||||||| ||||||||| ||||| ||||||||    
T  25576351 ctttaagtttaacgtttgtaccggattagtcgttttagtttcaaattagtccttta 25576296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 30738482 - 30738525
Alignment:
Q  198 gtccaaaaagtgtttatgacaccaaacatgattacttacataca 241  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  30738482 gtccaaaaagtgttcattacaccaaacatgattacttacataca 30738525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 43230753 - 43230863
Alignment:
Q  126 aacaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaac 224  Q
    |||||||||||| ||||  ||||| |||||||||| ||| |||||| | |||| ||||| ||||||||| | | |||||||||||||||||||| |||||    
T  43230753 aacaaattgatcccttt--tcatctaactttgttaaaaa-tgcttacaagaccatttaatattgaggtgaaggatccaaaaagtgtttatgacatcaaac 43230849  T
Q  225 atgattacttacataca 241  Q
       ||||||||||||||    
T  43230850 ---attacttacataca 43230863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 33763127 - 33763161
Alignment:
Q  202 aaaaagtgtttatgacaccaaacatgattacttac 236  Q
    |||||||||||||||||||||||||||||||||||    
T  33763127 aaaaagtgtttatgacaccaaacatgattacttac 33763161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 30053986 - 30053934
Alignment:
Q  182 aacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||| ||||||||    
T  30053986 aacattgaggtggaaggtc-aaacactatttatgacaccaaacataattactta 30053934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 33407136 - 33407220
Alignment:
Q  150 caactttgttataaagtgcttaatgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    ||||||||||| ||| ||||||  |||| ||||||||||| | |  |||| ||||| | |||||||||| ||||||||||||||||    
T  33407136 caactttgttaaaaattgcttatggaccatttaacattgatgcgttaggttcaaaagg-gtttatgacatcaaacatgattactta 33407220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 34595923 - 34595983
Alignment:
Q  174 gaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattactta 235  Q
    |||| ||||||||| || ||| |||||||||| |||||||||||| |||| |||||||||||    
T  34595923 gaccatttaacattaagatggtaggtccaaaa-gtgtttatgacatcaaatatgattactta 34595983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 25576135 - 25576207
Alignment:
Q  88 gtaaaagtgaacgagttagtccttcatttttatcttgcaacaaattgatctctttcttcatccaactttgtta 160  Q
    |||||||||||| |||| |||||| | || | | ||| |||||||||||| |||| ||||| |||||||||||    
T  25576135 gtaaaagtgaacaagttggtcctttaattattttttgtaacaaattgatcccttttttcatacaactttgtta 25576207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 39396 - 39338
Alignment:
Q  179 tttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaacatgattacttaca 237  Q
    |||||| ||||||||| ||||| |||||||| |||| ||||||||||||||| ||||||    
T  39396 tttaacgttgaggtggcaggtcgaaaaagtgcttataacaccaaacatgattgcttaca 39338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University