View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_low_29 (Length: 241)

Name: NF4227_low_29
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_low_29
NF4227_low_29
[»] chr7 (5 HSPs)
chr7 (3-239)||(23822308-23822549)
chr7 (43-106)||(12422048-12422111)
chr7 (41-92)||(41331371-41331422)
chr7 (43-98)||(30551984-30552039)
chr7 (43-81)||(12264738-12264776)
[»] chr4 (5 HSPs)
chr4 (25-106)||(22889568-22889649)
chr4 (25-106)||(22941232-22941313)
chr4 (24-106)||(33617930-33618010)
chr4 (43-106)||(48194420-48194483)
chr4 (27-72)||(2803423-2803468)
[»] chr6 (1 HSPs)
chr6 (43-110)||(7202271-7202336)
[»] scaffold0252 (1 HSPs)
scaffold0252 (41-84)||(9909-9952)
[»] chr1 (2 HSPs)
chr1 (26-72)||(2378112-2378158)
chr1 (43-97)||(16554304-16554358)
[»] chr3 (2 HSPs)
chr3 (24-97)||(48200398-48200471)
chr3 (43-106)||(51265920-51265984)
[»] chr2 (1 HSPs)
chr2 (44-93)||(4558698-4558746)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 23822549 - 23822308
Alignment:
Q  3 tatactaaaactaaaagagattaaattacactagagaacatttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatcc 102  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||     
T  23822549 tatactaaaactaaaaaagattaaattacactagagaatttttaagttatttaattataataaattggttctttcaatttttatcgtaccacttagatct 23822450  T
Q  103 tttatgtttgtttttatttgaaggagatcatttatattagttaattttaacaagttaaatcttcaa-----nnnnnnnnngtatcaattaggttatttaa 197  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  23822449 tttatctttgtttttatttgaaggaggtcatttatattagttaattttaacaagttaaatcttcaagtttttttatttttttatcaattaggttatttaa 23822350  T
Q  198 gttatttggagcttaaaaattacaattaaataacataaaaga 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23822349 gttatttggagcttaaaaattacaattaaataacataaaaga 23822308  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 12422048 - 12422111
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatccttta 106  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| || |||| ||||| |||||||    
T  12422048 tttaagttattaaattgtaataaattggtcatttaagtttttttcataccacttaggtccttta 12422111  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 41331422 - 41331371
Alignment:
Q  41 catttaagttatttaattataataaattggtcatttcagtttttatcgtacc 92  Q
    |||||||||||||||||| |||||||||| |||||| ||||||| |||||||    
T  41331422 catttaagttatttaattgtaataaattgatcatttaagtttttctcgtacc 41331371  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 30552039 - 30551984
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttag 98  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| | ||||| |||||    
T  30552039 tttaagttatttaattgtaataaattggtcctttaagtttttttggtaccacttag 30551984  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 12264738 - 12264776
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtt 81  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  12264738 tttaagttatttaattgtaataaattggtcatttaagtt 12264776  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 22889568 - 22889649
Alignment:
Q  25 aaattacactagagaacatttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatccttta 106  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| ||  ||||||| | ||||||||| |||||||||    
T  22889568 aaattacattagagatcatttaagttatttaattataataaattggtccttaaagttttttttgtaccgctttgatccttta 22889649  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 22941232 - 22941313
Alignment:
Q  25 aaattacactagagaacatttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatccttta 106  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||| ||  ||||||| | ||||||||| |||||||||    
T  22941232 aaattacattagagatcatttaagttatttaattataataaattggtccttaaagttttttttgtaccgctttgatccttta 22941313  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 33618010 - 33617930
Alignment:
Q  24 taaattacactagagaacatttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatccttta 106  Q
    |||||||||| ||||  |||||||||||||||||| ||||||||||||| ||| ||||||  ||||||||||||| |||||||    
T  33618010 taaattacacaagaggtcatttaagttatttaattgtaataaattggtcctttaagtttt--tcgtaccgcttaggtccttta 33617930  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 48194483 - 48194420
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatccttta 106  Q
    |||||||||||||||| |||||| ||| ||||||  |||||| ||||||| ||||| |||||||    
T  48194483 tttaagttatttaattgtaataagttgatcatttacgtttttttcgtacctcttaggtccttta 48194420  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 2803468 - 2803423
Alignment:
Q  27 attacactagagaacatttaagttatttaattataataaattggtc 72  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||    
T  2803468 attacactagagaccttttaagttatttaattgtaataagttggtc 2803423  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 7202271 - 7202336
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtttttatcgtaccgcttagatcctttatgtt 110  Q
    |||||||||||||| ||||||||||||||  ||| ||||||| |||||||  |||| |||||||||||    
T  7202271 tttaagttatttaaatataataaattggt--tttaagtttttttcgtaccatttaggtcctttatgtt 7202336  T

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Target: scaffold0252 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 9952 - 9909
Alignment:
Q  41 catttaagttatttaattataataaattggtcatttcagttttt 84  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  9952 catttaagttatttaattatagtaaattagtcatttaagttttt 9909  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2378112 - 2378158
Alignment:
Q  26 aattacactagagaacatttaagttatttaattataataaattggtc 72  Q
    |||||||| ||||| | |||||||||||||||||||| |||||||||    
T  2378112 aattacaccagagatcctttaagttatttaattataacaaattggtc 2378158  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16554304 - 16554358
Alignment:
Q  43 tttaagttatttaattataataaattggtcatttcagtttttatcgtaccgctta 97  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| | ||||| ||||    
T  16554304 tttaagttatttaattgtaataaattggtcctttaagtttttttggtaccactta 16554358  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 48200471 - 48200398
Alignment:
Q  24 taaattacactagagaacatttaagttatttaattataataaattggtcatttcagtttttatcgtaccgctta 97  Q
    |||||||||||||| | | ||||| |||||||||| |||  ||||| |||||| | ||||| ||||||||||||    
T  48200471 taaattacactagaaatcttttaacttatttaattgtaaagaattgatcatttaattttttttcgtaccgctta 48200398  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 51265984 - 51265920
Alignment:
Q  43 tttaagttatttaattataataaattggtcattt-cagtttttatcgtaccgcttagatccttta 106  Q
    |||||||||||||||| |||||| ||| |||||| |  ||||| ||||||| |||||||||||||    
T  51265984 tttaagttatttaattgtaataagttgatcatttacgttttttttcgtacctcttagatccttta 51265920  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 4558698 - 4558746
Alignment:
Q  44 ttaagttatttaattataataaattggtcatttcagtttttatcgtaccg 93  Q
    ||||||||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  4558698 ttaagttatttaattgtaataaattggtc-tttaagtttttttcgtaccg 4558746  T

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