View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_3 (Length: 544)
Name: NF4227_low_3
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 29795295 - 29795690
Alignment:
| Q |
1 |
tctttgaaagttaaagatgtacttatgttacattaaaagaggttacttt--aacacttttagtttatacacttctaattaaactgtttttgtattagatt |
98 |
Q |
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| T |
29795295 |
tctttgaaagataaagatgtacttatgttacattaaaagaggttactttttaacacttttagtttatacacttctaattaaactgtttttgtattagatt |
29795394 |
T |
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| Q |
99 |
ggacaagctttatgaagcagcacttccaagttagggatctacttactttaatcatgtccacaaaggtctacaaagtgaatgatattaattgtaaagttat |
198 |
Q |
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| T |
29795395 |
ggacaagctttatcaagcagcacttccaagttagggatctacttactttaatcatgtccacaaaggtctacaaagtgaatgatattaattgtaaagttat |
29795494 |
T |
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| Q |
199 |
cacaaatttgtattaaactgcttgcatgtatgggagtattaattctagttatattttgaaaaatctaagactaaattatttatttatttttcaactataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29795495 |
cacaaatttgtattaaactgcttgcatgtatgggagtattaattctagttatattttgaaaaatctaagactaaattatttatttatttttcaactataa |
29795594 |
T |
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| Q |
299 |
aagttactacttaaattgatctatatgattcaaaagtccatgatgacaataactactaagtgggttccttgtaccacactttaattacaacttact |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29795595 |
aagttactacttaaattgatctatatgattcaaaagtccatgatgacaataactactaagtgggttccttgtaccacactttaattacaacttact |
29795690 |
T |
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