View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_low_4 (Length: 481)

Name: NF4227_low_4
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_low_4
NF4227_low_4
[»] chr2 (5 HSPs)
chr2 (146-287)||(2819861-2820003)
chr2 (424-465)||(2819495-2819536)
chr2 (353-387)||(2819559-2819593)
chr2 (33-70)||(2823522-2823559)
chr2 (33-70)||(2826922-2826959)
[»] chr5 (1 HSPs)
chr5 (239-288)||(3405849-3405898)
[»] chr4 (1 HSPs)
chr4 (312-340)||(29657828-29657856)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 146 - 287
Target Start/End: Complemental strand, 2820003 - 2819861
Alignment:
Q  146 agaatacaaaagcag-ttagatatttctccaaaacaaattatttattaacattttgtgaacaataggcatgggtataagttatattatgaaattgaaata 244  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2820003 agaatacaaaagcagcttaaatatttctccaaaacaaattatttattaacattttgtgaagaataggcatgggtataagttatattatgaaattgaaata 2819904  T
Q  245 aaaacttacgatctgaaattgaagtatagataaggaagacaga 287  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2819903 aaaacttacgatgtgaaattgaagtatagataaggaagacaga 2819861  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 2819536 - 2819495
Alignment:
Q  424 gaccatctattattatatcaaatcgtataagaacctaaaaat 465  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2819536 gaccatctattattatatcaaatcgtataagaacctaaaaat 2819495  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 2819593 - 2819559
Alignment:
Q  353 atcaaaaacatgttgatcaccaaaacttaaagaag 387  Q
    |||||||||||||||||||||||||||||||||||    
T  2819593 atcaaaaacatgttgatcaccaaaacttaaagaag 2819559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 2823559 - 2823522
Alignment:
Q  33 taggaatgactgcagaaaattaaaatggcatgatattg 70  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2823559 taggaatgactgcagaaaataaaaatggcatgatattg 2823522  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 2826959 - 2826922
Alignment:
Q  33 taggaatgactgcagaaaattaaaatggcatgatattg 70  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  2826959 taggaatgactgcaaaaaataaaaatggcatgatattg 2826922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 3405849 - 3405898
Alignment:
Q  239 gaaataaaaacttacgatctgaaattgaagtatagataaggaagacagaa 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3405849 gaaataaaaacttacaatctgaaattgaagtatagataaggaagacagaa 3405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 29657856 - 29657828
Alignment:
Q  312 tccaattttacaattaacaattctcaata 340  Q
    |||||||||||||||||||||||||||||    
T  29657856 tccaattttacaattaacaattctcaata 29657828  T

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