View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_5 (Length: 477)
Name: NF4227_low_5
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 40885807 - 40885358
Alignment:
| Q |
18 |
atactaatactatactgttggagtggtgatagatccatctgttttacatataataattgttatatggaggataaccatgagtctgaggaccaaaataagg |
117 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885807 |
atactaatactatactgttggagtggtgcaacatccatctgttttacatataataattgttatatggaggataaccatgagtctgaggaccaaaataagg |
40885708 |
T |
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| Q |
118 |
atcataattttgatagggatcaaaattctgatagtaggaccctgatggagggggatagtatccactgggatatgttgtagggtaagcagacatattgttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885707 |
atcataattttgatagggatcaaaattctgatagtaggaccctgatggagggggatagtatccactgggatatgttgtagggtaagcagacatattgttc |
40885608 |
T |
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| Q |
218 |
ccataggaatattgttctccagtccgaacccaacaaagttctactttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885607 |
ccataggaatattgttctccagtccgaacccaacaaagttctactttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctg |
40885508 |
T |
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| Q |
318 |
agatgtatatcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagtaaacaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40885507 |
agatgtatatcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagaaaacaaa |
40885408 |
T |
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| Q |
418 |
tagatttaaaattaaaacttgaaggatgagacacaaaacacgtacctttg |
467 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
40885407 |
tagatttaaaattaaaacttgcaggatgagacacaaaacacatacctttg |
40885358 |
T |
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