View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_low_7 (Length: 432)
Name: NF4227_low_7
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 48407896 - 48408314
Alignment:
| Q |
16 |
cagtttcatgataaaaatcgaactaatgaatgggacattccaagctttatactcatgaatcatacaatctgctacttttaattcagctagggaaaacata |
115 |
Q |
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| T |
48407896 |
cagtttcatgataaaaatcgaactaatgaatgggacattccaagctttatactcatgaatcatacaatctgctacttttaattcagctagggaaaacata |
48407995 |
T |
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| Q |
116 |
ctttcatggtgtggattgatatggtgtccaccaaaaattcaattattactcaaaactgggatagatttaccatcacccacgctccaccgacttccggctt |
215 |
Q |
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| T |
48407996 |
ccttcatggtgtggaatgatatggtgtccaccaaaaattcaattatcactcaaaactgggatagatttaccatcacccacgctccaccgacttccggctt |
48408095 |
T |
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| Q |
216 |
ttaagatgaattttgatttataaatgcttctccaaacaaaactatgattatgttcaaaatttgaatcgagaaaattacacctcagatagtatctagcttt |
315 |
Q |
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| T |
48408096 |
ttaagatgaattttgatttacaaatgcttctccaaacaaaattagaattatgttcaaaatttgaatcgagaaaattacacctcagatagtatctagcttt |
48408195 |
T |
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| Q |
316 |
atacattcttacgtcaagagttacacttctggagaccaaaaccatggtctatccagcctttcaataaaacaa----tagtttcaaatttatgaatataat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48408196 |
atacattcttacgtcaagagttacacttctggagaccaaaaccatggtctatccagcctttcaataaaacaaggagtagtttcaaatttatgaatataat |
48408295 |
T |
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| Q |
412 |
gcggacctatgcttctcct |
430 |
Q |
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| T |
48408296 |
gcggacctaggattctcct |
48408314 |
T |
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