View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_1 (Length: 944)
Name: NF4228_high_1
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 25108511 - 25108988
Alignment:
| Q |
19 |
caaaatacatgaaagacaacctttcccatttcacaagggctccacataattgaaattctttcattttttgcaaaataaattgcaaaaattaacaaccaaa |
118 |
Q |
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| T |
25108511 |
caaaatacatgaaagacaacctttcccatttcacaagggctccacataattgaaattctttcattttttgcaaaataaattgcaaaaaataataaccaaa |
25108610 |
T |
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| Q |
119 |
gnnnnnnnnnnnnnnnn--caattattgcttcaagaatgaaccaaaccacaccacacataaatgcaaatatcacatgatannnnnnnnnnataaatccca |
216 |
Q |
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| T |
25108611 |
gtttttttttttcctttttcaattattgcttcaagaatgaaccaaaccacaccacacataaatgcaaatatcacatgat---ttttttttataaatccca |
25108707 |
T |
|
| Q |
217 |
ttgcaaatgcctcctagggatactgtaagaaacatttatagtggtggttccatctgcacttggagggtaatatggtgaatcttctgcatattcagttggt |
316 |
Q |
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| T |
25108708 |
ttgcaaatgcctcctagggatactgtaagaaacatttatagtggtggttccatctgcacttggagggtaatatggtgaatcttctgcatattcagttggt |
25108807 |
T |
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| Q |
317 |
agtgacatccaatgcaaacttggcttccaatctgcttctctaaggacccttaatatttccttcaacactaccttgcttccttcggctgacaaatgaaccc |
416 |
Q |
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| T |
25108808 |
agtgacatccaatgcaaacttggcttccaatctgcttctctaaggacccttaatatttccttcaacactaccttgcttccttcggctgacaaatgaaccc |
25108907 |
T |
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| Q |
417 |
catccctaacaaaaaataataatatttgtcaggttctctgatctaatttcttccactagactcaaccttgttgatatcttc |
497 |
Q |
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| T |
25108908 |
catccctaacaaaaaataataatatttattaagttctctgatctaaattcttccgctagactcaaccttgttgatatcttc |
25108988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 566 - 929
Target Start/End: Original strand, 25109057 - 25109439
Alignment:
| Q |
566 |
gccacgtggatgtgagttggggtctatgtggaataattagtttagggtttagctagcaatattgatgtgcatttttatttgtatagacaaaagt---tga |
662 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||| |
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| T |
25109057 |
gccacgtggatgtgagttggggtctatgtggaataattaatctagggtttagctagcaataatgatgtgtatttttatttgtatacacaaaagtagttga |
25109156 |
T |
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| Q |
663 |
tagctgcaagttagcaactaacagatttggagatgttaaggaaataactgtaggattcaaaaaa----------gtaaaagttgaaaatactataattga |
752 |
Q |
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| T |
25109157 |
tagctgcaagtcagcaactaacatatttggagatgttaaggaaataactgtaggattaaaaaaatgcagaaaaagtaaaagtggaaaatacta--attga |
25109254 |
T |
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| Q |
753 |
aagtaccactatcaactataa--------aatatatttatacttacgtaaagctgacatctaaccagtcctctctttcctggattgcagaccatagatta |
844 |
Q |
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||||||||||| |||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25109255 |
aagtaccactagaaactataaggctataaagaatatttctactcacgtaaagctgacatctaaccagtcctctctttcctggattgcagaccatagatta |
25109354 |
T |
|
| Q |
845 |
acgacttttaaattcatctcatcacatagttccaccagtgccctagcatatattccacaatgttcatttgttcttccagtctgtg |
929 |
Q |
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|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25109355 |
acaactttcaaattcatctcatcacatagttccaacagtgccctagcatatattccacaatgttcatttgttcttccagtctgtg |
25109439 |
T |
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