View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_15 (Length: 318)
Name: NF4228_high_15
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 12229133 - 12229435
Alignment:
| Q |
7 |
ttccttgtgccccaagagcaaaaacaagcttgcatcagtccttcacatatctttcatccttcaaccttcattgtttcaactagagaactattcagtatct |
106 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12229133 |
ttccttgtgccccaagagcaaaaa--agcttgcatcagtccttcacatatctttcatccttcaaccttcattgtttcaactagagaactattcagtatct |
12229230 |
T |
|
| Q |
107 |
taaattttacaagattcttcttttcccaataagaaaacatgggcttagaaaattcttctacatcctcacaaatccacaacctcttccttgctctagttaa |
206 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12229231 |
taaattgtacaagattcttcttttcccaataagaaaacatgggcttagaaaattcttctacatcctcacaaatccacaacctcttccttgctctagttaa |
12229330 |
T |
|
| Q |
207 |
agccacatacagttgtttgagttcagagcacaaaacattatgctttgaatcgacaaaactttggcagttaatacgcgatcgagggtccaacagattcttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12229331 |
agccacatacagttgtttgagttcagagcacaaaacattatgctttgaatcgacaaaactttggcagt---tacgcgatcgagggtccaacagattcttt |
12229427 |
T |
|
| Q |
307 |
tctttcat |
314 |
Q |
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|||||||| |
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| T |
12229428 |
tctttcat |
12229435 |
T |
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