View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4228_high_24 (Length: 246)
Name: NF4228_high_24
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_24 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 25614248 - 25614298
Alignment:
| Q |
196 |
cctcttacagtggaattggagtctacccatggaatggaaatgcccaatttt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25614248 |
cctcttacagtggaattggagtctacccatggaatggaaatgcccaatttt |
25614298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 25614096 - 25614145
Alignment:
| Q |
20 |
gcccaaagcttcaagttcttttcatcagaagggtttgtagactccacttt |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25614096 |
gcccaaagcttcaagttcttttcatcagaagggtttgtagactccacttt |
25614145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 25614136 - 25614188
Alignment:
| Q |
84 |
actccacttttgaacaacattcttgatctctaattttcattttatctcaatgg |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25614136 |
actccacttttgaacaacattcttgacctctaattttcattttatctcaatgg |
25614188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 31262239 - 31262284
Alignment:
| Q |
20 |
gcccaaagcttcaagttcttttcatcagaagggtttgtagactcca |
65 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
31262239 |
gcccaaagcttcaagttctttttgtgagaagggtttgtagactcca |
31262284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University