View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_29 (Length: 240)
Name: NF4228_high_29
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_29 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 45 - 240
Target Start/End: Original strand, 1390221 - 1390416
Alignment:
| Q |
45 |
gcgaatatactattaagtatggtgatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatt |
144 |
Q |
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| T |
1390221 |
gcgaatatactattaagtatggtgatggatcaatatcacaaggagatcttagtttgaaaactcttacattagatttcacctctggttcttctatttcatt |
1390320 |
T |
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| Q |
145 |
tcctaaaacagtgataggttttagacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccatgtctct |
240 |
Q |
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| T |
1390321 |
tcctaaaacagtgataggttttggacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccgtgtctct |
1390416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 1397688 - 1397871
Alignment:
| Q |
48 |
aatatactattaagtatggtgatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcc |
147 |
Q |
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| T |
1397688 |
aatatactattgactatggtgatggatcaaaatcacaaggagatcttagtttagaaactcttacattagattccacctctggttcttctatttcattgcc |
1397787 |
T |
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| Q |
148 |
taaaacagtgataggttttagacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacc |
231 |
Q |
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| T |
1397788 |
taaaactgtgataggttgtggacatataaatatagtgttatttgaaggctagagctctggtgtggttgaccttgcaaatggacc |
1397871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 45645234 - 45645349
Alignment:
| Q |
47 |
gaatatactattaagtatggtgatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttc |
146 |
Q |
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| T |
45645234 |
gaatatacaattaactatggagatgattcacattcacaaggagatcttagtgttgaaactcttacattggattccaccactggaagccctgtttcatttc |
45645333 |
T |
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| Q |
147 |
ctaaaacagtgatagg |
162 |
Q |
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| T |
45645334 |
ctaaaactgtgatagg |
45645349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 14200962 - 14201134
Alignment:
| Q |
68 |
gatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttcctaaaacagtgataggtttta |
167 |
Q |
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| T |
14200962 |
gatggatcaatttcacaaggatatcttagtgtggagactcttacattagattccaccaccggctactcagtttcatttcctaaaacaatgataggatgtg |
14201061 |
T |
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| Q |
168 |
gacataataatacattgtcatttgaaggcaagagctctggtctggttggccttggaaatggacccatgtctct |
240 |
Q |
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| T |
14201062 |
gatatagaaatacagggacgtttcatggcccaagctctggtatagttggccttggaagtggacctatgtctct |
14201134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 33893429 - 33893475
Alignment:
| Q |
80 |
tcacaaggagatcttagtttggaaactcttacattagatttcacctc |
126 |
Q |
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| T |
33893429 |
tcacaaggagatcttagtatggagactctaacattagattccacctc |
33893475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 19649507 - 19649401
Alignment:
| Q |
47 |
gaatatactattaagtatggtgatggatcaatatcacaaggagatcttagtttggaaactcttacattagatttcacctctggtttttctatttcatttc |
146 |
Q |
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| T |
19649507 |
gaatatactattaactttagtgatcaatcatattcacaaggagaacttagtgttgagactcttacattggattccaccaccggtcattctgtttcatttc |
19649408 |
T |
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| Q |
147 |
ctaaaac |
153 |
Q |
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| T |
19649407 |
ctaaaac |
19649401 |
T |
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