View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_31 (Length: 220)
Name: NF4228_high_31
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21226819 - 21226647
Alignment:
| Q |
1 |
ctcagcctcagtcatacccaccatcgattgttgccttatgatctctcttcccatttctcatatcaaagaatgcattccaatcttgttcttgctatctacg |
100 |
Q |
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||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21226819 |
ctcagcctcagccatacccatcatcgactgttgccttatgatctctcttcccatttctcatatcaaagaatgcattccaatcttgttcttgctatctacg |
21226720 |
T |
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| Q |
101 |
gttacaaggcttttctcttcaaggactgttattcaattttccgggaaatgcctaaagtaattaagtgaatagg |
173 |
Q |
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| T |
21226719 |
gttacaaggcttttctcttcaaggactgttattcaatattcccggaaatgcctaaaataattgagtgaatagg |
21226647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 21232517 - 21232356
Alignment:
| Q |
1 |
ctcagcctcagtcatacccaccatcgattgttgccttatgatctctcttcccatttctcatatcaaagaatgcattccaatcttgttcttgctatctacg |
100 |
Q |
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| T |
21232517 |
ctcagcctcagccatacccatcatcgactgtttccttatgatctctcttctcatttctcatatcaaagaatgcattccaatcttgctcttgctatctata |
21232418 |
T |
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| Q |
101 |
gttacaaggcttttctcttcaaggactgttattcaattttccgggaaatgcctaaagtaatt |
162 |
Q |
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| T |
21232417 |
gttacaaggcttttctcttcgaggactgttattccattttccgggaaatgcctaaagtaatt |
21232356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 10034474 - 10034347
Alignment:
| Q |
21 |
ccatcgattgttgccttatgatctctcttcccatttctcatatcaaagaatgcattccaatcttgttcttgctatctacggttacaaggcttttctcttc |
120 |
Q |
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| T |
10034474 |
ccatcgactgttgccttatgatttctcttcccactgctcgtaccaaagtatgcattccaatcttgttcttgctatcaatagttacaaggcttttctcgtc |
10034375 |
T |
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| Q |
121 |
aaggactgttattcaattttccgggaaa |
148 |
Q |
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| T |
10034374 |
aaggattgttattccaatttccgggaaa |
10034347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 7890115 - 7890256
Alignment:
| Q |
21 |
ccatcgattgttgccttatgatctctcttcccatttctcatatcaaagaatgcattccaatcttgttcttgctatctacggttacaaggcttttctcttc |
120 |
Q |
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||||||| |||||||||||||| |||||||||||| ||| || ||||| ||||||||||||| |||| |||| ||||| |||| ||||||||| ||||| |
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| T |
7890115 |
ccatcgactgttgccttatgatttctcttcccattgctcgtaacaaagtatgcattccaatcctgttgttgccatctatagttaaaaggcttttatcttc |
7890214 |
T |
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| Q |
121 |
aaggactgttattcaattttccgggaaatgcctaaagtaatt |
162 |
Q |
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| T |
7890215 |
aaggattgatattgcaatttccgggaaatgcccagagtaatt |
7890256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 7870080 - 7870164
Alignment:
| Q |
64 |
caaagaatgcattccaatcttgttcttgctatctacggttacaaggcttttctcttcaaggactgttattcaattttccgggaaa |
148 |
Q |
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||||| ||||||||| ||| ||||||| ||||||| |||||||||||||||||||||| || |||||||| | ||||| ||||| |
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| T |
7870080 |
caaagtatgcattcctatcctgttcttcctatctatagttacaaggcttttctcttcaacgattgttattccaatttccaggaaa |
7870164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 34720749 - 34720787
Alignment:
| Q |
70 |
atgcattccaatcttgttcttgctatctacggttacaag |
108 |
Q |
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| T |
34720749 |
atgcattctaatcctgttcttgctatctacggttacaag |
34720787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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