View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_5 (Length: 509)
Name: NF4228_high_5
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Original strand, 8457660 - 8458140
Alignment:
| Q |
20 |
cgttgaaagaatgagattaaagaacaagagagaagatagtagatagaatgtataaattgtactatttgtcacttgttgactctcttttgttattacttat |
119 |
Q |
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| T |
8457660 |
cgttgaaagaatgacaataaagaacaagagagaagatagtagatagaatgtataaattgtactatttgtcaattgttgactctcttttgttattacttat |
8457759 |
T |
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| Q |
120 |
ttcttacggcttgaacacggcgttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaatcgtgagataatgttgctaaaccaaattgatt |
219 |
Q |
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| T |
8457760 |
ttcttacggcttgaacacggcgttagtagataaatttttcatttgttttgctgtcatcaaaacatcaatcgtgagataatgtggctaaaccaaattgatt |
8457859 |
T |
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| Q |
220 |
cttacatattcaaagacttgaaaattagcatgcatatcaatgttcnnnnnnnnacgcaagaattgaaatcaagaactttagtgtaatttattttcttact |
319 |
Q |
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| T |
8457860 |
cttacatattcaaggacttgaaaattaacatgcatatcaatgttcttttttttacgcaagaattgaaatcaagaactttagtgtaatttattttcttact |
8457959 |
T |
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| Q |
320 |
actttatccacactttcaaaacactttcggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgtgt |
419 |
Q |
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| T |
8457960 |
actttatccacactttcaaaacacttttggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgtgt |
8458059 |
T |
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| Q |
420 |
agtttctttcaacaagtagggtccaaaagtgctaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
500 |
Q |
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| T |
8458060 |
agtttctttcaacaagtagggtccaaaagtggtaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
8458140 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 32652169 - 32652123
Alignment:
| Q |
141 |
gttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaa |
187 |
Q |
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| T |
32652169 |
gttagcagacaaattatttatttgttttgttatcatcaaaacatcaa |
32652123 |
T |
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