View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_high_8 (Length: 414)
Name: NF4228_high_8
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 26803077 - 26803474
Alignment:
| Q |
1 |
tgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803077 |
tgaaaagggcacatttttatttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagac |
26803176 |
T |
|
| Q |
101 |
atcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagtacttccctagagcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26803177 |
atcatttgcttatcagtcaaattggccacaatttctgcatcaaattctgaaaatgcagccctgcacataaatttaaaattagtacttccctagagcaaaa |
26803276 |
T |
|
| Q |
201 |
atattattgtatgttctgcaattaactatatgaatgaatttaatcagaatcaaacctgaaatctcggcgtttcttcaaggttgaggtccaatcagatcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26803277 |
atattattgtatgttctgcaattaactatatgaatgaatttaatcagaatcaaacctgaaatctaggcgtttcttcaaggttgaggtccaatcagatcca |
26803376 |
T |
|
| Q |
301 |
acttgagctccacttaaaattagaagttcaaacaacatcctgaatatagacaacatcataatatttgttagtcttcatcgataatgcaattagttcat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
26803377 |
acttgagctccacttaaaattagaagttcaaacaacatcctgaatatagacaacatcataatattttttagtcttcatctataatgcaattagttcat |
26803474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 25284456 - 25284402
Alignment:
| Q |
217 |
tgcaattaactatatgaatgaatttaatcagaatcaaacctgaaatctcggcgtt |
271 |
Q |
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| T |
25284456 |
tgcacttaagtatatgaatgaattttctcataatcaaacctgaaatctaggcgtt |
25284402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 30343352 - 30343583
Alignment:
| Q |
37 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
136 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30343352 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
30343451 |
T |
|
| Q |
137 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaaaaatattattgtatgt---tctgcaattaactatatg |
232 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||| | || | ||||| | |||||||| |||||| |
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| T |
30343452 |
gcatcaaattctgaaaatgcatctctgcacataaatttaaagttagttacttccctagagcaaaaaaaataatttatgtgcatatgcaattaggtatatg |
30343551 |
T |
|
| Q |
233 |
aatgaatttaatcagaatcaaacctgaaatct |
264 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |
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| T |
30343552 |
aatgaattttctcataatcaaacctgaaatct |
30343583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 18416797 - 18416893
Alignment:
| Q |
246 |
agaatcaaacctgaaatctcggcgtttcttcaaggttgaggtccaatcagatccaacttgagctccacttaaaattagaagttcaaacaacatcctg |
342 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
18416797 |
agaatccaacctgaaatcttgacgtttcttcaagattgaggtccaatcagatccaacttgagcaccacttaaaactagaagttcaaacaacatcctg |
18416893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 18416377 - 18416520
Alignment:
| Q |
20 |
tttacctgtaaaatttggttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtca |
119 |
Q |
| |
|
||||||| ||||||| | |||||||||||||||||||||| |||| | ||||||||||| |||||||| |||||||||||| |||||| |||||||| | |
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| T |
18416377 |
tttacctctaaaattcgattagcattatcaacaactcctcgaactctgcttatatcaatcccatattccaaactaatagacaacatttgtttatcagtta |
18416476 |
T |
|
| Q |
120 |
aattggccacaatttctgcatcaaattctgaaaatgcagccctg |
163 |
Q |
| |
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| ||||||| || |||||| ||||||||||||||||| |||| |
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| T |
18416477 |
agttggccaatgttgctgcatgaaattctgaaaatgcagtcctg |
18416520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 37 - 264
Target Start/End: Complemental strand, 18986427 - 18986196
Alignment:
| Q |
37 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18986427 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
18986328 |
T |
|
| Q |
137 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaaaaatattattgtatgt---tctgcaattaactatatg |
232 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||| || | || | ||||| | |||||||| |||||| |
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|
| T |
18986327 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagttacttacctagagcaacaaaaataatttatgtgcatatgcaattaggtatatg |
18986228 |
T |
|
| Q |
233 |
aatgaatttaatcagaatcaaacctgaaatct |
264 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |
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| T |
18986227 |
aatgaattttctcataatcaaacctgaaatct |
18986196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 23919090 - 23919321
Alignment:
| Q |
37 |
gttagcattatcaacaactcctctaactttacttatatcaatgccatattctgaactaatagacatcatttgcttatcagtcaaattggccacaatttct |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
23919090 |
gttagcattatcaacaactcctctaacttttcttatgtcaatgctatattctgaactaatagacatcatttgcttatcaatcaaattggccacaatttct |
23919189 |
T |
|
| Q |
137 |
gcatcaaattctgaaaatgcagccctgcacataaatttaaaattag-tacttccctagagcaaaaatattattgtatgt---tctgcaattaactatatg |
232 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||| || | || | ||||| | |||||||| |||||| |
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|
| T |
23919190 |
gcatcaaattctgaaaatgcagctctgcacataaatttaaagttagttacttacctagagcaacaaaaataatttatgtgcatatgcaattaggtatatg |
23919289 |
T |
|
| Q |
233 |
aatgaatttaatcagaatcaaacctgaaatct |
264 |
Q |
| |
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||||||||| ||| ||||||||||||||||| |
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|
| T |
23919290 |
aatgaattttctcataatcaaacctgaaatct |
23919321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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