View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_10 (Length: 378)
Name: NF4228_low_10
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_10 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 25614670 - 25614326
Alignment:
| Q |
31 |
ttatacttatcaattttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgata |
130 |
Q |
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| T |
25614670 |
ttatacttatcaattttactagacgattaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattgaaacacactgata |
25614571 |
T |
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| Q |
131 |
attctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa |
230 |
Q |
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| T |
25614570 |
actctagtaagtactcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaa |
25614471 |
T |
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| Q |
231 |
cccatttgagca---------------gcaagtactagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctaga |
315 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25614470 |
cccatttgagcagcaatcatttgagcagcaagtagtagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatcctaga |
25614371 |
T |
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| Q |
316 |
tcactactgtcccagtcttctaagtttaaaatagtacatgacctg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25614370 |
tcactactgtcccagtcttctaagtttaaaatagtacatgacctg |
25614326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 310
Target Start/End: Complemental strand, 31262759 - 31262495
Alignment:
| Q |
45 |
tttactagacgactaaatgttctccaaaccatcaatctaattggttgcatataattagatgagaaactaattggaacacactgataattctagtaagtac |
144 |
Q |
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| T |
31262759 |
tttactagaagagtaaatgttctccaaaccatcaaattaattggttgcatataattagattataaactaaatgaaaaacgctgataattctagtaacta- |
31262661 |
T |
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| Q |
145 |
tcctgggtaaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataagtaacccatttgagcagc |
244 |
Q |
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| ||| |||| ||||| |||||| || |||||| || |||||||| |||| |||||| | ||| | |||||||| ||| | || ||||| ||| |
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| T |
31262660 |
tactgttgaaataatagtctacatctcgttgaaatctttcgacatgagaataattcttctctgattggcctattttggatatatgtcctgcttgagaagc |
31262561 |
T |
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| Q |
245 |
aagtactagctttgatttccatgtctcgtaagagcttcgcattctgcaaaatatatttagcaaatc |
310 |
Q |
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||| | || | ||| |||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
31262560 |
tagtgtcaactattattgccatgtcttgtaagatattcgcattctgcaaaatatatgtagcaaatc |
31262495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 32429344 - 32429410
Alignment:
| Q |
160 |
agtttacatcccggagaaatccttggacatgaggataactcttctataatttgactattttgcataa |
226 |
Q |
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| T |
32429344 |
agtttacatcccggagacatccttggacaagaggacaactcttctataacttgataattttggataa |
32429410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 23940052 - 23940112
Alignment:
| Q |
153 |
aaatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttga |
213 |
Q |
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| T |
23940052 |
aaatgaaagtttgcattcaggagacatccttggacaggaggataattcttctataatttga |
23940112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 24004879 - 24004920
Alignment:
| Q |
172 |
ggagaaatccttggacatgaggataactcttctataatttga |
213 |
Q |
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| T |
24004879 |
ggagacatccttggacaggaggataactcttgtataatttga |
24004920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 14438148 - 14438209
Alignment:
| Q |
154 |
aatgatagtttacatcccggagaaatccttggacatgaggataactcttctataatttgact |
215 |
Q |
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||||| ||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
14438148 |
aatgaaagtttacatgctggagaaatccttggacaagaggataattcttctataatttgact |
14438209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 14435489 - 14435544
Alignment:
| Q |
160 |
agtttacatcccggagaaatccttggacatgaggataactcttctataatttgact |
215 |
Q |
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| T |
14435489 |
agtttacatgcaggagatatccttggacaagaagataattcttctataatttgact |
14435544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 7861036 - 7860992
Alignment:
| Q |
258 |
gatttccatgtctcgtaagagcttcgcattctgcaaaatatattt |
302 |
Q |
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| T |
7861036 |
gattttcatgtctcgtaagagagttgcattctgcaaaatatattt |
7860992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 521 - 572
Alignment:
| Q |
160 |
agtttacatcccggagaaatccttggacatgaggataactcttctataattt |
211 |
Q |
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| T |
521 |
agtttacatgctggagaaatccttggacaagaggacaattcttctataattt |
572 |
T |
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