View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4228_low_12 (Length: 365)
Name: NF4228_low_12
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_12 |
 | |
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| [»] chr5 (11 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 41 - 365
Target Start/End: Complemental strand, 38181680 - 38181349
Alignment:
| Q |
41 |
tattcaatcaaaaaactgacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaa--aaactcaattctcagaagaa |
137 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| || |||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
38181680 |
tattcattcaaaaatctgacatattgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagacaaagaaaactcaattctcagaagaa |
38181581 |
T |
|
| Q |
138 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
38181580 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggct |
38181481 |
T |
|
| Q |
234 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccatttt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
38181480 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38181381 |
T |
|
| Q |
334 |
catcaagcatcataggtgaaggaagtggaagg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38181380 |
catcaagcatcataggtgaaggaagtggaagg |
38181349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 41 - 365
Target Start/End: Original strand, 38189451 - 38189782
Alignment:
| Q |
41 |
tattcaatcaaaaaactgacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaa--aaactcaattctcagaagaa |
137 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| || |||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
38189451 |
tattcattcaaaaatctgacatattgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagacaaagaaaactcaattctcagaagaa |
38189550 |
T |
|
| Q |
138 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
38189551 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggct |
38189650 |
T |
|
| Q |
234 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccatttt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
38189651 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38189750 |
T |
|
| Q |
334 |
catcaagcatcataggtgaaggaagtggaagg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38189751 |
catcaagcatcataggtgaaggaagtggaagg |
38189782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 41 - 365
Target Start/End: Original strand, 38216676 - 38217007
Alignment:
| Q |
41 |
tattcaatcaaaaaactgacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaa--aaactcaattctcagaagaa |
137 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| || |||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
38216676 |
tattcattcaaaaatctgacatattgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagacaaagaaaactcaattctcagaagaa |
38216775 |
T |
|
| Q |
138 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
38216776 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggct |
38216875 |
T |
|
| Q |
234 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccatttt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
38216876 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38216975 |
T |
|
| Q |
334 |
catcaagcatcataggtgaaggaagtggaagg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38216976 |
catcaagcatcataggtgaaggaagtggaagg |
38217007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 365
Target Start/End: Complemental strand, 38208906 - 38208573
Alignment:
| Q |
41 |
tattcaatcaaaaaactgacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaa--aaactcaattctcagaagaa |
137 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| || |||| || |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
38208906 |
tattcattcaaaaatctgacatattgcataaagtagaattaattttatagatttgtcaaatagtatcgtttagacaaagaaaactcaattctcagaagaa |
38208807 |
T |
|
| Q |
138 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
38208806 |
aattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggct |
38208707 |
T |
|
| Q |
234 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaac-atc-gtcctccaatgaaattggcttctttccatt |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || || |
|
|
| T |
38208706 |
tcaacatcgtcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacgatcggtcctccaatgaaattggcttcttcccttt |
38208607 |
T |
|
| Q |
332 |
ttcatcaagcatcataggtgaaggaagtggaagg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
38208606 |
ttcatcaagcatcataggtgaaggaagtggaagg |
38208573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 58 - 365
Target Start/End: Complemental strand, 38457024 - 38456710
Alignment:
| Q |
58 |
gacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaaaaactcaattctcagaagaaaattacagaaaaattgtgt |
156 |
Q |
| |
|
||||||||||||||||| || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38457024 |
gacatattgcataaagtagaattaatttaatatatctgtcaaataacatcgtttaaacaaaaaactcaattctcagaagaaaaatacagaaaagttgtgt |
38456925 |
T |
|
| Q |
157 |
tgcaaacactataagctttttatatcgtgtcatgcaagttactgttat------catcattgtgaaataaacgactgccggcttcaacatcgtcctccaa |
250 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456924 |
tgcaaacaatataagctttttatatcttgtcatgcaagttactgttatatatatcatcattgtcaaataaacgactgccggcttcaacatcgtcctccaa |
38456825 |
T |
|
| Q |
251 |
attactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaagcatcataggt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38456824 |
attactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaaaatcgtcctccaatgaaattggcttcttcccattttcatcaagcatcataggt |
38456725 |
T |
|
| Q |
351 |
gaaggaagtggaagg |
365 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38456724 |
gaaggaagtggaagg |
38456710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 38171777 - 38172025
Alignment:
| Q |
14 |
aattcattgggctcctaattaatggattattcaatcaaaaaactgacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttag |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38171777 |
aattcattgggctcctaat----ggattattcaataaaaaaactgacatattgcataaagtggaattaacttaatagatttgtcaaataacatcgtttag |
38171872 |
T |
|
| Q |
113 |
acaaaaaactcaattctcagaagaaaattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38171873 |
acaaaaaactcaattctcagaagaaaattacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattg |
38171972 |
T |
|
| Q |
213 |
tgaaataaacgactgccggcttcaacatcgtcctccaaattactgaagtcaat |
265 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38171973 |
tcaaataaacgaccgccggtttcaacatcgtcctccaaattactgaagtcaat |
38172025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 26032478 - 26032771
Alignment:
| Q |
58 |
gacatattgcataaagtgga-ttaacttaatagatttgtcaaataacatcgtttagacaaaaaactcaattctcagaagaaaattacagaaaaattgtgt |
156 |
Q |
| |
|
||||||||||||||||| || |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
26032478 |
gacatattgcataaagtagaattaatttaatacatctgtcaaataacatcgtttagacaaaaaactcaattctcagaacaaaat-acagaaacattgtgt |
26032576 |
T |
|
| Q |
157 |
tgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtgaaataaacgactgccggcttcaacatcgtcctccaaattact |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26032577 |
tgcaaacactataagctttttatatcgtgtcatgcaagttacggttatcatcattgtcaaataaacgaccgccggcttcaacatcgtcctccaaattact |
26032676 |
T |
|
| Q |
257 |
gaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaa |
339 |
Q |
| |
|
||||||||| | ||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||||||| |
|
|
| T |
26032677 |
gaagtcaatacatagaaatggatccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaa |
26032771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 38181748 - 38181719
Alignment:
| Q |
14 |
aattcattgggctcctaattaatggattat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38181748 |
aattcattgggctcctaattaatggattat |
38181719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 38189383 - 38189412
Alignment:
| Q |
14 |
aattcattgggctcctaattaatggattat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38189383 |
aattcattgggctcctaattaatggattat |
38189412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 38208974 - 38208945
Alignment:
| Q |
14 |
aattcattgggctcctaattaatggattat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38208974 |
aattcattgggctcctaattaatggattat |
38208945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 38216608 - 38216637
Alignment:
| Q |
14 |
aattcattgggctcctaattaatggattat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38216608 |
aattcattgggctcctaattaatggattat |
38216637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 53350943 - 53351013
Alignment:
| Q |
269 |
atccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaa |
339 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
53350943 |
atccatcaagtcatcaaggtttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaa |
53351013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 53350735 - 53350788
Alignment:
| Q |
50 |
aaaaaactgacatattgcataaagtggatt-aacttaatagatttgtcaaataa |
102 |
Q |
| |
|
||||||||| ||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
53350735 |
aaaaaactggcatattgcataaagtagaatcaacttaatagatttgtcaaataa |
53350788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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