View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_13 (Length: 363)
Name: NF4228_low_13
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 4417778 - 4418124
Alignment:
| Q |
1 |
accaccatcaagccatgttgagttgcttagaaccaacaaagactattgccaagaagcactatagaggagtaaggcgtcgtccttgggggaaatatgccgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4417778 |
accaccatcaagccatgttgagttgcttagaaccaacgaagactattgccaagaagcactatagaggagtaaggcgtcgtccttgggggaaatatgcggc |
4417877 |
T |
|
| Q |
101 |
ggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4417878 |
ggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaaa |
4417977 |
T |
|
| Q |
201 |
atgagaggttcaaaggctttgcttaatttcccagctgaaactgttgctgcagcttccatgcaaatcgaattttctaattctaagcttaacttgaataata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4417978 |
atgagaggttcaaaggctttgcttaatttcccagctgaaactgttgctgcagcttccatgcaaatcgaattttctaattctaagcttaacttgaataata |
4418077 |
T |
|
| Q |
301 |
gtaatagtaataatcatcatgattctgaatcaagtgctagcagctag |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4418078 |
gtaatagtaataatcatcatgattctgaatcaagtgctagcagctag |
4418124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 4420207 - 4420106
Alignment:
| Q |
132 |
agagtatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaaaatgagaggttcaaaggctttgcttaatttcc |
231 |
Q |
| |
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||||| |||||||| ||||| | ||||||||| |||||||| | |||||||||| ||||||||| | ||| ||||||||||| || | |||||||||| |
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| T |
4420207 |
agagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctttgagaattagaggttcaaaagcatgtcttaatttcc |
4420108 |
T |
|
| Q |
232 |
ca |
233 |
Q |
| |
|
|| |
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|
| T |
4420107 |
ca |
4420106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 34649013 - 34648843
Alignment:
| Q |
63 |
agaggagtaaggcgtcgtccttgggggaaatatgccgcggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctg |
162 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||||| || ||||||||||||||| | |||||||||| |||||||||| ||||| |||||||||| |
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|
| T |
34649013 |
agaggtgtaaggcgtcgaccgtggggaaaatatgcagcagagattcgtgactcgaagcaaaatggagctaggatatggcttggtacatttcaaacagctg |
34648914 |
T |
|
| Q |
163 |
aagaagctgctatggcttatgatagagctgctttcaaaatgagaggttcaaaggctttgcttaatttccca |
233 |
Q |
| |
|
|||| ||||| || |||||||||| ||||||||||| |||||| ||| | || |||||| | ||||||||| |
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|
| T |
34648913 |
aagaggctgcaattgcttatgataaagctgctttcagaatgaggggtgctaaagctttgttgaatttccca |
34648843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 41379217 - 41379108
Alignment:
| Q |
84 |
tgggggaaatatgccgcggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatg |
183 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||| | ||||||||||| |||||||||||||| |||| ||||| || || ||| ||||||||| |
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|
| T |
41379217 |
tgggggaaatttgcggcggagattcgtgatccggcgaagaacggagctagagtttggcttggaacatttgaaaccgctgaggatgcggctttggcttatg |
41379118 |
T |
|
| Q |
184 |
atagagctgc |
193 |
Q |
| |
|
|||||||||| |
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|
| T |
41379117 |
atagagctgc |
41379108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 19719995 - 19719951
Alignment:
| Q |
129 |
gctagagtatggcttggaacattccaaacagctgaagaagctgct |
173 |
Q |
| |
|
|||||||||||||||||||||||| | || || |||||||||||| |
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|
| T |
19719995 |
gctagagtatggcttggaacattcaacacggccgaagaagctgct |
19719951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19840598 - 19840642
Alignment:
| Q |
129 |
gctagagtatggcttggaacattccaaacagctgaagaagctgct |
173 |
Q |
| |
|
|||||||||||||||||||||||| | || || |||||||||||| |
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|
| T |
19840598 |
gctagagtatggcttggaacattcaacacggccgaagaagctgct |
19840642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 32986339 - 32986415
Alignment:
| Q |
136 |
tatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaaaatgagaggttca |
212 |
Q |
| |
|
|||||||||| || ||| | || |||||||||||||| | |||||||||||||||||||| || |||||||||||| |
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|
| T |
32986339 |
tatggcttggcactttcaacactgctgaagaagctgcaagagcttatgatagagctgcttttaatatgagaggttca |
32986415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 38809672 - 38809799
Alignment:
| Q |
84 |
tgggggaaatatgccgcggagattcgtgactcggctcgtcatggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatg |
183 |
Q |
| |
|
||||| |||| ||| || |||||||| || |||||| | ||||||||| |||| |||||||| ||||| | || ||||| |||||||| | ||||||| |
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| T |
38809672 |
tggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagcttatg |
38809771 |
T |
|
| Q |
184 |
atagagctgctttcaaaatgagaggttc |
211 |
Q |
| |
|
|| | |||||||| ||||||||||||| |
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|
| T |
38809772 |
atcgtgctgcttttgaaatgagaggttc |
38809799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 25986024 - 25986060
Alignment:
| Q |
159 |
gctgaagaagctgctatggcttatgatagagctgctt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
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| T |
25986024 |
gctgaagaagctgctttggcttatgatagagctgctt |
25986060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 1008618 - 1008693
Alignment:
| Q |
124 |
atggagctagagtatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaa |
199 |
Q |
| |
|
||||||||||||| ||||||||||| | | |||| | |||||||||| | |||||||||||||||| ||||||| |
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|
| T |
1008618 |
atggagctagagtttggcttggaacgtacgaaactgaagaagaagctggtttggcttatgatagagccactttcaa |
1008693 |
T |
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