View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_15 (Length: 344)
Name: NF4228_low_15
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 31533509 - 31533184
Alignment:
| Q |
1 |
tatagctgctaagatcttctctggtttgagaatgtatggtaactttagattacctaaacattgtgataacaatgaagttcttaaagctctttgcaatgaa |
100 |
Q |
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| T |
31533509 |
tatagctgctaagatcttctctggtttgagaatgtatggtaactttagattacctaaacattgtgataacaatgaagttcttaaagctctttgtaatgaa |
31533410 |
T |
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| Q |
101 |
gctggttggactgttgaacctgatggaaccacttatcgtaaggtaacattacgttgcattgttacattatggatttagtttgtatatataaacggtgtaa |
200 |
Q |
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| T |
31533409 |
gctggttggactgttgaacctgatggaaccacttatcgtaaggtaacattactttgcattgttacattatggatttagtttgtatatataaacggtgtaa |
31533310 |
T |
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| Q |
201 |
aactttttacacggacaatcaactaaatcatgcaatatatatttttatggatatatttttgaaactaacctataaaatgatattaatatgtgatttgatg |
300 |
Q |
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| T |
31533309 |
aactttttacacggacaatcaactaaatcatgcaatatagatttttatggatatatttttgaaactaacctataaaatgatattaaaatgtgatttgacg |
31533210 |
T |
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| Q |
301 |
gatgcatgtgtaaaaaagttttacac |
326 |
Q |
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| T |
31533209 |
gatgcatgtgtaaaaaagttttacac |
31533184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31541086 - 31540941
Alignment:
| Q |
1 |
tatagctgctaagatcttctctggtttgagaatgtatggtaactttagattacctaaacattgtgataacaatgaagttcttaaagctctttgcaatgaa |
100 |
Q |
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| T |
31541086 |
tatagcagcgaagatcttctccggtttgagaatgtatgggaactataagcttccgaaacattgtgacaacaatgaagttctcaaagctctttgtaatgaa |
31540987 |
T |
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| Q |
101 |
gctggttggactgttgaacctgatggaaccacttatcgtaaggtaa |
146 |
Q |
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| T |
31540986 |
gctggttggatcgttgaacctgatggtacaacttatcgtaaggtaa |
31540941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 52229679 - 52229767
Alignment:
| Q |
50 |
ttacctaaacattgtgataacaatgaagttcttaaagctctttgcaatgaagctggttggactgttgaacctgatggaaccacttatcg |
138 |
Q |
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| T |
52229679 |
ttaccaaaacactgtgataacaatgaggtcttgaaagctctttgtgctgaagctggttggactgttgaagaagatggcaccacttatcg |
52229767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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