View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_17 (Length: 314)
Name: NF4228_low_17
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_17 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 150 - 306
Target Start/End: Original strand, 29312496 - 29312652
Alignment:
| Q |
150 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
249 |
Q |
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| T |
29312496 |
cactgatcctatctgagcatgtctaactcaaatttcattagactgtcggtgactctcgtgtgtacgaactcacttgcccgactctctcccacttgcttga |
29312595 |
T |
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| Q |
250 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
306 |
Q |
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| T |
29312596 |
gcatctctctatgaaccctctctttgattgtgttctttattctctcaaattcatctc |
29312652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 29312391 - 29312495
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312391 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
29312490 |
T |
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| Q |
117 |
tattt |
121 |
Q |
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||||| |
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| T |
29312491 |
tattt |
29312495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 29054637 - 29054467
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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| T |
29054637 |
tatatgtctaaagttgtttgtgtgattattactgttagagactccttgaggttttatcacttcaaaaatggaagttgttcttgtaaagacttatggtgat |
29054538 |
T |
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| Q |
117 |
tatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcat |
187 |
Q |
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| T |
29054537 |
tatttgactcagattattgggaataagaggtcacaatgaccctatttgagcgtgtctaactcaaatttcat |
29054467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 34635475 - 34635297
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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| T |
34635475 |
tatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgac |
34635376 |
T |
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| Q |
117 |
tatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
195 |
Q |
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| T |
34635375 |
tatttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
34635297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 4439 - 4617
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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|||||| ||||||||||| ||||| |||||||| || ||| |||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
4439 |
tatatggctaaggttgttgatgtgatgattgttgtcagagactccttcaggtttcatcacttcaaaaatggaaattgttcatgtaatgatttatggtgac |
4538 |
T |
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| Q |
117 |
tatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
195 |
Q |
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| T |
4539 |
tatttgactaagattattgggaataaggggtcacaatgatcctatctgagcctttccaactcaaattttattagactgt |
4617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 28743876 - 28744054
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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||||||||||||||||| | || || |||||||| || ||| ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||| |
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| T |
28743876 |
tatatgtctaaggttgtcggtgttataattgttgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagacttatggtgat |
28743975 |
T |
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| Q |
117 |
tatttgactcaggttattgagagtaagtggtcgcactgatcctatctgagcatgtctaactcaaatttcattagactgt |
195 |
Q |
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| T |
28743976 |
tatttgaatcagattattgggattaagtggtgacgataatcctatctgagtttgtctaactcaaatttgattagactgt |
28744054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 13792366 - 13792255
Alignment:
| Q |
17 |
tatatgtctaaggttgttagagtgattattgttgttagcgaccccttgaggttttatcacttcaaaaatgaaaattgttcttgtaatgatttatggtgaa |
116 |
Q |
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|||||||| || |||||| | |||| ||||| || || ||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
13792366 |
tatatgtccaatgttgttggtgtgacgattgtcgtcagagactccttgaggtttcatcacttcaaaaatggaaattgttcttgtaaagatttttggtgat |
13792267 |
T |
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| Q |
117 |
tatttgactcag |
128 |
Q |
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| T |
13792266 |
tatttgactcag |
13792255 |
T |
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