View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4228_low_20 (Length: 278)

Name: NF4228_low_20
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4228_low_20
NF4228_low_20
[»] chr1 (1 HSPs)
chr1 (25-262)||(47192609-47192845)
[»] chr4 (4 HSPs)
chr4 (20-220)||(45144858-45145059)
chr4 (21-220)||(23217299-23217499)
chr4 (24-160)||(21356045-21356180)
chr4 (20-52)||(33753010-33753042)
[»] scaffold0393 (1 HSPs)
scaffold0393 (21-220)||(10634-10834)
[»] chr2 (2 HSPs)
chr2 (21-216)||(3934373-3934569)
chr2 (21-220)||(38974751-38974951)
[»] chr8 (5 HSPs)
chr8 (21-220)||(16659739-16659939)
chr8 (21-220)||(22015753-22015953)
chr8 (21-220)||(1668945-1669145)
chr8 (21-220)||(38520305-38520505)
chr8 (167-212)||(27185452-27185497)
[»] chr5 (1 HSPs)
chr5 (21-220)||(3175083-3175283)
[»] chr3 (4 HSPs)
chr3 (21-220)||(2337895-2338095)
chr3 (20-211)||(52894098-52894289)
chr3 (77-192)||(21240003-21240119)
chr3 (157-222)||(12707358-12707423)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 47192845 - 47192609
Alignment:
Q  25 cagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaatacac 124  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||     
T  47192845 cagacaaaaaagcttcgggtggccgccacaacaaaaattcacggaagaaaccggaaaaaatacaaagaggtgcc-gcctatatacgtaacaccaatacaa 47192747  T
Q  125 cgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaaac 224  Q
    |||||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47192746 cgagaaaacccaaaactaacgatgacatcaaacaataaggccgaagtatactagcatagagcaagcatacccctgtctcactcctgaactagccaaaaac 47192647  T
Q  225 acagccagactgcaaacactcaagtgcagcgcaccaac 262  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47192646 acagccagactgcaaacacccaagtgcagcgcaccaac 47192609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 45145059 - 45144858
Alignment:
Q  20 agagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaa 119  Q
    ||||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| || ||||||||||||||||||| ||||| ||||||||||||||    
T  45145059 agagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacggggaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaa 45144961  T
Q  120 tacaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagc 217  Q
    | ||||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  45144960 ttcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagc 45144861  T
Q  218 caa 220  Q
    |||    
T  45144860 caa 45144858  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 23217299 - 23217499
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  23217299 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 23217397  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     | ||||||||| |||||| |||| ||| ||||||||||| || ||||||  ||||||||||||||||||||||||||||  |||||||| |||||||||    
T  23217398 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 23217497  T
Q  219 aa 220  Q
    ||    
T  23217498 aa 23217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 21356180 - 21356045
Alignment:
Q  24 ccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaataca 123  Q
    ||||||||||||| |||||||||| || |  | || || |  ||||| |||| |||||||||||||||||||||| ||||| |||| |||||||||| ||    
T  21356180 ccagacaaaaaagtttggggtggctgctattaaaataacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacttaacaccaattca 21356082  T
Q  124 ccgagaaaatccaaaatcaacgatgacatcaaacaat 160  Q
    ||||||||| |||||| |||| ||| |||||||||||    
T  21356081 ccgagaaaacccaaaaccaacaatggcatcaaacaat 21356045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 33753042 - 33753010
Alignment:
Q  20 agagccagacaaaaaagcttggggtggccgcca 52  Q
    ||||||||||||||||| |||||||||||||||    
T  33753042 agagccagacaaaaaagtttggggtggccgcca 33753010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 10634 - 10834
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| ||||||||||||||||||| || ||||| |||||||||||||||    
T  10634 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggttcc-gcctaaatacgtaacaccaat 10732  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  10733 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagcc 10832  T
Q  219 aa 220  Q
    ||    
T  10833 aa 10834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 3934373 - 3934569
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  3934373 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 3934471  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccgaactag 216  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||    
T  3934472 tcaccgagaaaaaccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactag 3934569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 38974751 - 38974951
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||  |  ||||| |||| |||||||||||||||||||||| ||||| ||| |||||||||||    
T  38974751 gagccagacaaaaaagtttggggtggctgctattaaaaaatcttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatatgtaacaccaat 38974849  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  38974850 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagtaagcatacccctgcctcactcccgaactagcc 38974949  T
Q  219 aa 220  Q
    ||    
T  38974950 aa 38974951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 16659939 - 16659739
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  16659939 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 16659841  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     ||||||| ||| |||||| |||| ||| ||||||||||| || ||||||||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  16659840 tcaccgaggaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcatcactcccgaactagcc 16659741  T
Q  219 aa 220  Q
    ||    
T  16659740 aa 16659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 22015953 - 22015753
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  ||||| |||  |||||||||||||||||||||   |||| |||||||||||||||    
T  22015953 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcggaaaaaatgggaaaaaatacaaagaggtgcta-cctaaatacgtaacaccaat 22015855  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||    
T  22015854 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcctgaactagcc 22015755  T
Q  219 aa 220  Q
    ||    
T  22015754 aa 22015753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 1669145 - 1668945
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  1669145 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 1669047  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     | ||||||||| |||||| |||| ||| ||||||||||| || ||||||  ||||||||||||||||||||||||||||  |||||||| |||||||||    
T  1669046 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 1668947  T
Q  219 aa 220  Q
    ||    
T  1668946 aa 1668945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 38520305 - 38520505
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||| ||||||||||    
T  38520305 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacataacaccaat 38520403  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     | ||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||  |||||||| |||||||||    
T  38520404 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcataccccttcctcactcctgaactagcc 38520503  T
Q  219 aa 220  Q
    ||    
T  38520504 aa 38520505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 27185452 - 27185497
Alignment:
Q  167 gaagtatactagcatagagcaagcatacccctgtctcactcccgaa 212  Q
    |||||||||| |||| | ||||||||||||||| ||||||||||||    
T  27185452 gaagtatacttgcatggggcaagcatacccctgcctcactcccgaa 27185497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 3175283 - 3175083
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |  || || |||| ||||||||||||||||||| |  ||||| |||||||||||||||    
T  3175283 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgcgaaaaaaacaggaaaaaatacaaagaggttct-gcctaaatacgtaacaccaat 3175185  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaagtata--ctagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     ||||||||||| |||||| |||| ||| ||||||||||| || ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  3175184 tcaccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctgcctcactcccgaactagcc 3175085  T
Q  219 aa 220  Q
    ||    
T  3175084 aa 3175083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 2337895 - 2338095
Alignment:
Q  21 gagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaat 120  Q
    |||||||||||||||| |||||||||| || |  | ||||| |   |||| || | |||||||||||||||||||||| ||||| |||||||||||||||    
T  2337895 gagccagacaaaaaagtttggggtggctgctattaaaaaaacttgaggaaaaatcgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaat 2337993  T
Q  121 acaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccgaactagcc 218  Q
     | ||||||||| |||||| |||| ||| ||||||||||| || ||||||  ||||||||||||||||||||||||||||  |||||||| |||||||||    
T  2337994 tccccgagaaaacccaaaaccaacaatggcatcaaacaatgaggccgaagtatatactagcatagagcaagcatacccctacctcactcctgaactagcc 2338093  T
Q  219 aa 220  Q
    ||    
T  2338094 aa 2338095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 52894289 - 52894098
Alignment:
Q  20 agagccagacaaaaaagcttggggtggccgccacaacaaaaattcacggaagaaactggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaa 119  Q
    ||||||||||||||||| |||||||||| || |  | ||||| |   |||| |||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  52894289 agagccagacaaaaaagtttggggtggctgctattaaaaaaacttgtggaaaaaacgggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaa 52894191  T
Q  120 tacaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tatactagcatagagcaagcatacccctgtctcactcccga 211  Q
    | ||||||||||| |||||| |||| ||| |||||||| || || ||||||  |||||||||| |||||||||||||||||| |||||||||||    
T  52894190 ttcaccgagaaaacccaaaaccaacaatggcatcaaac-atgaggccgaagtatatactagcacagagcaagcatacccctgcctcactcccga 52894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 21240119 - 21240003
Alignment:
Q  77 ggaaaaaatacaaagaggtgcccgcctatatacgtaacaccaatacaccgagaaaatccaaaatcaacgatgacatcaaacaataagaccgaag--tata 174  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||| |||| ||| ||||||||||| |  ||||||  ||||    
T  21240119 ggaaaaaatacaaagaggtgcc-gcctaaatacgtaacaccaattcaccgagaaaacccaaaaccaacaatggcatcaaacaatgacgccgaagtatata 21240021  T
Q  175 ctagcatagagcaagcat 192  Q
    ||||||||||||||||||    
T  21240020 ctagcatagagcaagcat 21240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 12707423 - 12707358
Alignment:
Q  157 caataagaccgaagtatactagcatagagcaagcatacccctgtctcactcccgaactagccaaaa 222  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||  ||||| || ||| ||||||||    
T  12707423 caataaggccgaagtatactagcatggagcaagcatactcctgcatcacttccaaacaagccaaaa 12707358  T

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