View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4228_low_23 (Length: 254)

Name: NF4228_low_23
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4228_low_23
NF4228_low_23
[»] chr4 (3 HSPs)
chr4 (1-87)||(1390774-1390860)
chr4 (176-246)||(1390865-1390935)
chr4 (76-165)||(45645951-45646040)
[»] chr8 (4 HSPs)
chr8 (75-165)||(14192654-14192744)
chr8 (91-201)||(14183738-14183851)
chr8 (91-165)||(40718477-40718551)
chr8 (75-179)||(14201651-14201755)
[»] chr5 (3 HSPs)
chr5 (75-165)||(34646763-34646853)
chr5 (75-165)||(34666457-34666547)
chr5 (76-160)||(19648706-19648790)
[»] chr6 (2 HSPs)
chr6 (92-162)||(34303447-34303517)
chr6 (82-164)||(33888832-33888914)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1390774 - 1390860
Alignment:
Q  1 tctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1390774 tctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat 1390860  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 1390865 - 1390935
Alignment:
Q  176 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390865 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 1390935  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 45645951 - 45646040
Alignment:
Q  76 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 165  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||| |||| |||||||||||||    
T  45645951 atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaa 45646040  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 14192654 - 14192744
Alignment:
Q  75 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 165  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  14192654 catctttggaaatttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaa 14192744  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 14183738 - 14183851
Alignment:
Q  91 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattgag---tgtagactttgt 187  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||   || || |   ||||||||||||    
T  14183738 gctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtgtaatgggtgttgtagactttgt 14183837  T
Q  188 ttactttactcctt 201  Q
    ||||||| ||||||    
T  14183838 ttactttcctcctt 14183851  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 40718477 - 40718551
Alignment:
Q  91 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 165  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||| ||||    
T  40718477 gctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaa 40718551  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 14201651 - 14201755
Alignment:
Q  75 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattga 174  Q
    ||||||||| ||  |||||||||| |||||||||||||||||| |||||   ||||| | |||  | ||||||||| ||||||||||||| |||||||||    
T  14201651 catctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgtaccaagccatattga 14201750  T
Q  175 gtgta 179  Q
     ||||    
T  14201751 atgta 14201755  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 34646763 - 34646853
Alignment:
Q  75 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 165  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34646763 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34646853  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 34666457 - 34666547
Alignment:
Q  75 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 165  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34666457 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34666547  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 19648790 - 19648706
Alignment:
Q  76 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgta 160  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19648790 atctttggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgta 19648706  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 34303447 - 34303517
Alignment:
Q  92 ctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 162  Q
    |||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  34303447 ctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaagtctgtagattgtacc 34303517  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 33888914 - 33888832
Alignment:
Q  82 gggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaa 164  Q
    ||||| ||||| ||||| || ||||| ||||||||||| || ||| |||| ||| | |||||||||||||||||||| |||||    
T  33888914 gggaacttggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaa 33888832  T

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