View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4228_low_27 (Length: 246)

Name: NF4228_low_27
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4228_low_27
NF4228_low_27
[»] chr3 (4 HSPs)
chr3 (4-225)||(26673059-26673280)
chr3 (7-55)||(4844536-4844584)
chr3 (7-55)||(4870232-4870280)
chr3 (8-48)||(7673279-7673319)
[»] chr7 (3 HSPs)
chr7 (5-58)||(28115889-28115942)
chr7 (18-58)||(33362632-33362672)
chr7 (7-51)||(23595736-23595780)
[»] chr4 (5 HSPs)
chr4 (5-51)||(21660167-21660213)
chr4 (5-51)||(21668931-21668977)
chr4 (10-59)||(759881-759930)
chr4 (7-51)||(11418227-11418271)
chr4 (21-53)||(47286558-47286590)
[»] chr5 (4 HSPs)
chr5 (7-54)||(14495830-14495877)
chr5 (5-54)||(636594-636643)
chr5 (10-51)||(24652875-24652916)
chr5 (7-51)||(1410684-1410728)
[»] chr8 (1 HSPs)
chr8 (7-51)||(35641926-35641970)
[»] chr2 (1 HSPs)
chr2 (19-51)||(35916093-35916125)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 26673280 - 26673059
Alignment:
Q  4 taagagcacacttccaaatatcaagtcaataccaccagaccaacccaaatgaatttccctgaccgaaatgtaaaccttatactcaaatattttgcacagt 103  Q
    |||||||| |||||| ||| ||||||||||||||||| ||||| ||||||  ||||| | |||| |||||||||||||||||||||||||||||||||||    
T  26673280 taagagcatacttcccaatctcaagtcaataccaccaaaccaatccaaatagatttctccgaccaaaatgtaaaccttatactcaaatattttgcacagt 26673181  T
Q  104 ttgtgattaatttacctttgagaacaccagtaagtacagccatgcttgagttaattcttggtggaatcaaagggcccaatgctgtaccagggttaatcat 203  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26673180 ttgtgattaatttacctttgagaacaccagcaagtacagccatgcttgagttaattcttggtggaatcaaagggcccaatgctgtaccagggttaatcat 26673081  T
Q  204 gaccacatcaaaaccagtctct 225  Q
    ||||||||||||||||||||||    
T  26673080 gaccacatcaaaaccagtctct 26673059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 4844536 - 4844584
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaaatga 55  Q
    ||||||||| ||| ||  |||||||||||||||||||||||||||||||    
T  4844536 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatga 4844584  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 4870232 - 4870280
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaaatga 55  Q
    ||||||||| ||| ||  |||||||||||||||||||||||||||||||    
T  4870232 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatga 4870280  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 7673319 - 7673279
Alignment:
Q  8 agcacacttccaaatatcaagtcaataccaccagaccaacc 48  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  7673319 agcacacttccaaatcccaagtcaataccaccagaccaacc 7673279  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 28115889 - 28115942
Alignment:
Q  5 aagagcacacttccaaatatcaagtcaataccaccagaccaacccaaatgaatt 58  Q
    ||||||| ||||| || | |||||||||||||||||||||||||||||||||||    
T  28115889 aagagcatacttcaaagtctcaagtcaataccaccagaccaacccaaatgaatt 28115942  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33362672 - 33362632
Alignment:
Q  18 caaatatcaagtcaataccaccagaccaacccaaatgaatt 58  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  33362672 caaatctcaagtcaataccaccataccaacccaaatgaatt 33362632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 23595780 - 23595736
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||| | | || ||||||||||||||||||||||||||||    
T  23595780 gagcacactccgagatctcaagtcaataccaccagaccaacccaa 23595736  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 21660167 - 21660213
Alignment:
Q  5 aagagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  21660167 aagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21660213  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 21668931 - 21668977
Alignment:
Q  5 aagagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  21668931 aagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21668977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 759881 - 759930
Alignment:
Q  10 cacacttccaaatatcaagtcaataccaccagaccaacccaaatgaattt 59  Q
    ||||||| ||||| |||||||||||| |||| ||||||| ||||||||||    
T  759881 cacactttcaaatctcaagtcaatactaccataccaacctaaatgaattt 759930  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 11418271 - 11418227
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||||||||||  |||||||||| ||| ||||||||||||    
T  11418271 gagcacacttccaaatcccaagtcaatatcactagaccaacccaa 11418227  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 47286590 - 47286558
Alignment:
Q  21 atatcaagtcaataccaccagaccaacccaaat 53  Q
    ||||||| |||||||||||||||||||||||||    
T  47286590 atatcaattcaataccaccagaccaacccaaat 47286558  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 14495830 - 14495877
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaaatg 54  Q
    ||||||||| ||| ||  ||||||||||||||||||||||||||||||    
T  14495830 gagcacactcccagatcccaagtcaataccaccagaccaacccaaatg 14495877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 636594 - 636643
Alignment:
Q  5 aagagcacacttccaaatatcaagtcaataccaccagaccaacccaaatg 54  Q
    ||||||||||||||| || |||||||||||||| || ||||| |||||||    
T  636594 aagagcacacttccagatctcaagtcaataccatcataccaatccaaatg 636643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 24652916 - 24652875
Alignment:
Q  10 cacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    |||||| |||||| ||||||||||||||||||||||| ||||    
T  24652916 cacactcccaaatctcaagtcaataccaccagaccaatccaa 24652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 1410684 - 1410728
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||| ||| ||  |||||||||||||||||||||||||||    
T  1410684 gagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 35641926 - 35641970
Alignment:
Q  7 gagcacacttccaaatatcaagtcaataccaccagaccaacccaa 51  Q
    ||||||||| |||||| ||||| | ||||||||||||||||||||    
T  35641926 gagcacactcccaaatctcaagccgataccaccagaccaacccaa 35641970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 35916125 - 35916093
Alignment:
Q  19 aaatatcaagtcaataccaccagaccaacccaa 51  Q
    |||| ||||||||||||||||||||||||||||    
T  35916125 aaatctcaagtcaataccaccagaccaacccaa 35916093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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