View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_29 (Length: 242)
Name: NF4228_low_29
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_29 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 1625570 - 1625337
Alignment:
| Q |
17 |
aattctcataagtcaaatccaaaaacaagtcaactaaagcaccatctat--------ttgttatatccaacataaactcttcatttcaaactcttcaatt |
108 |
Q |
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| T |
1625570 |
aattctcataagtcaaatccaaaaacaagtcaactaaagcatcatttatacacacatttgttatatgcaacataaactctttatttcaaactcttcaatt |
1625471 |
T |
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| Q |
109 |
attctacaattgaattatggcaatcattggaaaaacattgtttatgctcgttttcttatcttcaattttctccatagcctcatcaagaaaaggaccttcc |
208 |
Q |
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| T |
1625470 |
attctacaattgaattatggcaatcattggaaaaacattatttatgctcgttttcgtatcttcaattttctccatagcctcatcaagaaaaggaccttcc |
1625371 |
T |
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| Q |
209 |
tcaagcaacatagattggtggtgcaatttaacac |
242 |
Q |
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| T |
1625370 |
tcgagcaaaatagattggtggtgcaatttaacac |
1625337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 1608566 - 1608330
Alignment:
| Q |
17 |
aattctcataagtcaaatccaaaaacaagtcaactaaagcaccatctat-------ttgttatatccaacataaactcttcat----ttcaaactcttca |
105 |
Q |
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| T |
1608566 |
aattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgttatatgcaacataaactcttattattttttaaactcttca |
1608467 |
T |
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| Q |
106 |
attattctacaattgaattatggcaatcattggaaaaacattgtttatgctcgttttcttatcttcaattttctccatagcctcatcaagaaaaggacct |
205 |
Q |
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| T |
1608466 |
attattctacaattgaattatggcaatcattggaaaaacattgtttatgctctttttcttatcatcaattttctcaatagcctcatcaagaaaaggacct |
1608367 |
T |
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| Q |
206 |
tcctcaagcaacatagattggtggtgcaatttaacac |
242 |
Q |
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| T |
1608366 |
tcctcaagcaacatagattggtggtgcaatttaacac |
1608330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 1632056 - 1631820
Alignment:
| Q |
17 |
aattctcataagtcaaatccaaaaacaagtcaactaaagcaccatctat-------ttgttatatccaacataaactcttcat----ttcaaactcttca |
105 |
Q |
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| T |
1632056 |
aattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgttatatgcaacataaactcttattattttttaaactcttca |
1631957 |
T |
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| Q |
106 |
attattctacaattgaattatggcaatcattggaaaaacattgtttatgctcgttttcttatcttcaattttctccatagcctcatcaagaaaaggacct |
205 |
Q |
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| T |
1631956 |
attattctacaattgaattatggcaatcattggaaaaacattgtttatgctctttttcttatcatcaattttctcaacagcctcatcaagaaaaggacct |
1631857 |
T |
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| Q |
206 |
tcctcaagcaacatagattggtggtgcaatttaacac |
242 |
Q |
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| T |
1631856 |
tcctcaagcaacatagattggtggtgcaatttaacac |
1631820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 10818579 - 10818725
Alignment:
| Q |
96 |
aaactcttcaattattctacaattgaattatggcaatcattggaaaaacattgtttatgctcgttttcttatcttcaattttctccatagcctcatcaag |
195 |
Q |
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| T |
10818579 |
aaactcttcaattattctacaattgaattatggcaatcattggaaaaacatggttcgtgctctttttcttatcttccattttctcaatagtctcatcaag |
10818678 |
T |
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| Q |
196 |
aaaaggaccttcctcaagcaacatagattggtggtgcaatttaacac |
242 |
Q |
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| T |
10818679 |
aaaaggaccttcctcaagcaacatagattggtggtgcaatttaacac |
10818725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 18786421 - 18786278
Alignment:
| Q |
100 |
tcttcaattattctacaattgaa-ttatggcaatcattggaaaaacattgtttatgctcgttttcttatcttcaattttctccatagcctcatcaagaaa |
198 |
Q |
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| T |
18786421 |
tcttcaattattctacaactgaaattatggcaatcattggaaaaacattgtttatgctctttttcttatcttcaattttctcaatagcctcatcaagaaa |
18786322 |
T |
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| Q |
199 |
aggaccttcctcaagcaacatagattggtggtgcaatttaacac |
242 |
Q |
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| T |
18786321 |
aggaccttcctcaagcaacatagattggtggtgcaatttaacac |
18786278 |
T |
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