View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4228_low_3 (Length: 530)
Name: NF4228_low_3
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 457
Target Start/End: Original strand, 31467712 - 31468161
Alignment:
| Q |
7 |
tatattttactatgacaaacaataaagtaccaaggtcaattaatcacttttgaaggtagaattgtatcaaccgcaaattgtttttagattttacgcatgg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31467712 |
tatattttactatgacaaacaataaagtaccaaggtcaattaatcacttttgaaggtagaattgtatcaaccgcaaattgtttttagattttacgcatgg |
31467811 |
T |
|
| Q |
107 |
ccaactctttgttgttgtattagagtaaaagaagnnnnnnnncatgattgaatatgttgacgttgttgcagcatgatagatatttgacaagtgtattaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
31467812 |
ccaactctttgttgttgtattagagtaaaagaagaaaaaaa-catgattgaatatgttgatgttgttgcagcatgatagatatttgacaagtgtactaaa |
31467910 |
T |
|
| Q |
207 |
ctattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagtattattaaatttgggttgtc |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
31467911 |
ctattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagttgtattaaatttgggttgcc |
31468010 |
T |
|
| Q |
307 |
ttaggcaattggtttgattgcataaaaataatagaaactgcgattaagttggtttgaaaattaggttagacagatgattaagccttcaaatcctctattg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
31468011 |
ctaggcaattggtttgattgcataaaaataatagaaactacgattaagttggtttgaaaattaggttaaacagatgattaagccttcgaatcctttattg |
31468110 |
T |
|
| Q |
407 |
ctcattataaaacaatttgctcctcttctctctcgattttcacctagtttt |
457 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
31468111 |
ctcattgtaaaacaatttgctcctcttctctctcaatgttcacctagtttt |
31468161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 520
Target Start/End: Original strand, 31468179 - 31468248
Alignment:
| Q |
451 |
tagttttcatcaatctcttgagtcaaaactctctcctaactaattatatcctcttaagtcaattcataac |
520 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||||||||| |
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|
| T |
31468179 |
tagttttcatcaatctcttgagtcaaaacactttcctaattaattatatcctcttaaatcaattcataac |
31468248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 180 - 457
Target Start/End: Original strand, 24384925 - 24385204
Alignment:
| Q |
180 |
tgatagatatttgacaagtgtattaaa-ctattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaat |
278 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||| |||||| ||||||| |||| ||||| | ||||| ||||||||||||||||||| | ||||| |
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| T |
24384925 |
tgatagatatttggcaagtgtaccaaaactatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttagcaatttctttaat |
24385024 |
T |
|
| Q |
279 |
gtaaaagtattattaaatttgggttgtcttaggcaattggtttgattgcataaaaataatagaaactgcgattaa-gttggtttgaaaattaggttagac |
377 |
Q |
| |
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|| || | ||||||||| ||||| | ||||| || |||| |||||||||| ||| | ||| ||||||||| |||||| || ||||||||| || |
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| T |
24385025 |
gtgaatgatctattaaattggggtttcccaaggcagatgttttgtttgcataaaagtaagaaaaagtgcgattaaagttggtctggtaattaggtttaac |
24385124 |
T |
|
| Q |
378 |
agatgattaagccttcaaatcctctattgctcattataaaacaatttgctcctcttctctctcgattttcacctagtttt |
457 |
Q |
| |
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| |||| |||||||||||||||||| |||||||| |||| ||||||| ||||||||||||| || |||| |||||||| |
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| T |
24385125 |
aagtgatcaagccttcaaatcctctactgctcattgtaaattaatttgcacctcttctctctcaatgttcagctagtttt |
24385204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 457
Target Start/End: Original strand, 32074156 - 32074438
Alignment:
| Q |
180 |
tgatagatatttgacaagtgtattaaact-attgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaat |
278 |
Q |
| |
|
||||||||||||||||||| || ||| | || ||| ||||||| |||||| |||||||||| ||||| |||||||||||||| |||| ||||||| |
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| T |
32074156 |
tgatagatatttgacaagtataccaaaattatcgaagtaataataataaatttgtatccacgatggttgttgttaatttctacttagaaatttcattaat |
32074255 |
T |
|
| Q |
279 |
gtaaaagtattattaaatttg--ggttgtcttaggcaattggtttgat-tgcataaaaataatagaaactgcgatt-aagttggttt-gaaaattaggtt |
373 |
Q |
| |
|
||||| | ||||||| ||| ||||| | |||||| |||| || | ||||||||||||| | ||| | ||| |||||||||| |||||||||| | |
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|
| T |
32074256 |
gtaaaggatgtattaaaattgtgggttgccctaggcagttgggtttagatgcataaaaataagaaaaaacacaattgaagttggtttcgaaaattagggt |
32074355 |
T |
|
| Q |
374 |
agacagatgattaagccttcaaatcctctattgctcattataaaacaatttgctcctcttctctctcgattttcacctagtttt |
457 |
Q |
| |
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|| ||||||||||||| ||||||||||| ||| ||||||| || |||| |||||||||||| || ||||||||||||| |
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| T |
32074356 |
tacgag-tgattaagccttcgaatcctctattattcactataaaataacttgcctctcttctctctcaatgttcacctagtttt |
32074438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 40139311 - 40139249
Alignment:
| Q |
349 |
attaagttggtttgaaaattaggttaga-cagatgattaagccttcaaatcctctattgctca |
410 |
Q |
| |
|
||||||||||||||||||||| ||| | || ||||| |||||||| |||||||||||||||| |
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|
| T |
40139311 |
attaagttggtttgaaaattatattaaaacaaatgatcaagccttcgaatcctctattgctca |
40139249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 180 - 457
Target Start/End: Original strand, 28974136 - 28974417
Alignment:
| Q |
180 |
tgatagatatttgacaagtgtatt--aaactattgaattaataatcttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaa |
277 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||| ||||||| ||||| ||||||||||| |||||| |||| || ||||||||||| || || |
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|
| T |
28974136 |
tgatagatatttggcaagtgtatccaaaactatcgaagtaataataataaatctgtatccacgaggattgttgttaatgtcaacttagcaatttcaggaa |
28974235 |
T |
|
| Q |
278 |
tgtaaaagtattatta-aatttgggttgtcttaggcaattggtttgattgcataaaaataatagaaactgcgatt-aagttggtttgaaaattaggttag |
375 |
Q |
| |
|
|||| | | ||||| |||| |||||||| || ||||||||||| ||||||||||| ||| | ||| ||||||| || |||||||| |||||||| | |
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|
| T |
28974236 |
tgtataggatgtattataattggggttgtcctaagcaattggtttaattgcataaaagtaagaaaaagtgcgattaaacttggtttgtaaattagggtta |
28974335 |
T |
|
| Q |
376 |
acagatgattaagccttcaaatcctctattgctcattataaaacaatttgctcctcttctctctcgattttcacctagtttt |
457 |
Q |
| |
|
| ||| ||| || |||| ||||||||| | || | ||||||| ||||| | ||||||||||||| || ||||||||||||| |
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|
| T |
28974336 |
agagaggatcaaacctttgaatcctctaatactgactataaaataatttacacctcttctctctcaatgttcacctagtttt |
28974417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 224 - 457
Target Start/End: Complemental strand, 46542644 - 46542410
Alignment:
| Q |
224 |
ttaaattagtatccacgagaattgttactaatttctacttagcaattgcattaatgtaaaagtattattaaatttgggttgtcttaggcaattggtttga |
323 |
Q |
| |
|
||||||| ||||| ||||| | ||||| ||||||||| ||||||||| |||||||||||||| ||||||||| |||||| | |||||| |||||||| |
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|
| T |
46542644 |
ttaaattcgtatctacgaggactgttattaatttctatttagcaatttcattaatgtaaaagatgtattaaattggggttgccctaggcagttggtttgt |
46542545 |
T |
|
| Q |
324 |
ttgcataaaaataatagaaactgcgatt-aagttggtttgaaaattaggttagacagatgattaagccttcaaatcctctattgctcattataaaacaat |
422 |
Q |
| |
|
|||||||||| ||| | || || |||| || |||||||||||| || ||| || ||| || |||| |||||||||||||||| | ||||| ||| |
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|
| T |
46542544 |
ttgcataaaagtaaaaagaagtgtgattaaatttggtttgaaaactaagtttaacgagcgatcaatcctttgaatcctctattgctcactgtaaaataat |
46542445 |
T |
|
| Q |
423 |
ttgctcctcttctctctcgattttcacctagtttt |
457 |
Q |
| |
|
|||| |||||||||||| || || |||||||||| |
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|
| T |
46542444 |
ttgcccctcttctctcttaatgtttacctagtttt |
46542410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 3861953 - 3862002
Alignment:
| Q |
227 |
aattagtatccacgagaattgttactaatttctacttagcaattgcatta |
276 |
Q |
| |
|
|||| ||||||||||| ||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
3861953 |
aatttgtatccacgaggattgttattaacttctacttagcaatttcatta |
3862002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 488
Target Start/End: Original strand, 28577972 - 28578009
Alignment:
| Q |
451 |
tagttttcatcaatctcttgagtcaaaactctctccta |
488 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28577972 |
tagttttgatcaatctcttgagtcaaaactctttccta |
28578009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 21534890 - 21534954
Alignment:
| Q |
389 |
ccttcaaatcctctattgctcattataaaacaatttgctcctcttctctctcgattttcacctag |
453 |
Q |
| |
|
||||||||| |||||||||||| ||||| | ||||| ||||||||||||| || ||||||||| |
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|
| T |
21534890 |
ccttcaaatactctattgctcacagtaaaatagtttgcacctcttctctctcaatgttcacctag |
21534954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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