View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_30 (Length: 242)
Name: NF4228_low_30
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_30 |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 40396276 - 40396518
Alignment:
| Q |
4 |
ttaaaaccaattaaatcacagattttgtctctt-cacaaaccattttct---ccatcctgcagaggtttgcgacggtgtggggaagttgcgattgaaacc |
99 |
Q |
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| T |
40396276 |
ttaaaaccaattaaatcacagattttgtctctttcacaaaccattttctgctccatcctgcacaggtttgcgacggtgtggggaagttgcgattgaaacc |
40396375 |
T |
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| Q |
100 |
acggccgtccacgaatacgtacgtttctcacagtggatcttgaaggttaaaatggcatacacgttttcaaatacgatctctaacttctctgcgaatacgt |
199 |
Q |
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| T |
40396376 |
acggccgtgcacgaatacgtacatttctcacagcggatcttgaaggttaaaatggcaaacacattttcaaatacgatctctaacttctctgcgaatacgt |
40396475 |
T |
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| Q |
200 |
acgtacctattctctcgctatcttctctgtttagggtttcatt |
242 |
Q |
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| T |
40396476 |
acgtacctattctctcgctgtcttctctgtttagggtttcatt |
40396518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42662360 - 42662309
Alignment:
| Q |
1 |
cgattaaaaccaattaaatcacagattttgtctc-ttcacaaaccattttct |
51 |
Q |
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| T |
42662360 |
cgattaaaatcaattaaatcacagattttgtctctttcacaaaccattttct |
42662309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42660064 - 42660116
Alignment:
| Q |
1 |
cgattaaaaccaattaaatcacaga-ttttgtctc-ttcacaaaccattttct |
51 |
Q |
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| T |
42660064 |
cgattaaaaccaattaaatcacagatttttgtgtctttcacaaaccattttct |
42660116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31117928 - 31118173
Alignment:
| Q |
1 |
cgattaaaaccaattaaatcacagattttgtctctt-cacaaaccattttct---ccatcctgcagaggtttgcgacggtgtggggaagttgcgattgaa |
96 |
Q |
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| T |
31117928 |
cgattaaaaccaattaaatcatagattttgtctctttcacaaaccattttctgctccatcctgcacaggtttgcgacggtgtggggaagttgcgattgaa |
31118027 |
T |
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| Q |
97 |
accacggccgtccacgaatacgtacgtttctcacagtggatcttgaaggttaaaatggcatacacgttttcaaatacgatctctaacttctctgcgaata |
196 |
Q |
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| T |
31118028 |
accacggccgtgcacgaacacgtacgtttctcacagtggatcttgaaggttaaaatggcaaacacgttttcaaatacgatctctaacttctctgcgaata |
31118127 |
T |
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| Q |
197 |
cgtacgtacctattctctcgctatcttctctgtttagggtttcatt |
242 |
Q |
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| T |
31118128 |
cgtacgtacctattctctagttgtcttctctgtttagggtttcatt |
31118173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 50054218 - 50053977
Alignment:
| Q |
4 |
ttaaaaccaattaaatcacagattttgtctctt-cacaaaccattttct---ccatcctgcagaggtttgcgacggtgtggggaagttgcgattgaaacc |
99 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50054218 |
ttaaaatcaattaaatcacagattttgtctctttcacaaaccattttctgctccatcctgcacaggtttgcgacggtgtggggaagttgcgattgaaacc |
50054119 |
T |
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| Q |
100 |
acggccgtccacgaatacgtacgtttctcacagtggatcttgaaggttaaaatggcatacacgttttcaaatacgatctctaacttctctgcgaatacgt |
199 |
Q |
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| T |
50054118 |
acggccgtgcacgaatatgt-cgtttctcacagtggatcttgaaggttaaaatggcaaacacattttcaaatacaatctctaacttctctgcgaatacgt |
50054020 |
T |
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| Q |
200 |
acgtacctattctctcgctatcttctctgtttagggtttcatt |
242 |
Q |
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| T |
50054019 |
acgtacctattctctcgttgtcttctctgtttagggtttcatt |
50053977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14592053 - 14592008
Alignment:
| Q |
2 |
gattaaaaccaattaaatcacagattttgtctc-ttcacaaaccat |
46 |
Q |
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| T |
14592053 |
gattaaaaccaattaaatctcagattttgtctctttcacaaaccat |
14592008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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