View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_32 (Length: 229)
Name: NF4228_low_32
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 23675396 - 23675606
Alignment:
| Q |
1 |
gaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatcttt |
100 |
Q |
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| T |
23675396 |
gaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatcttt |
23675495 |
T |
|
| Q |
101 |
tattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23675496 |
tattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagacgaggttggaaatgaggtgggattatgaataggacaa |
23675595 |
T |
|
| Q |
201 |
aggagtcggaa |
211 |
Q |
| |
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||||||||||| |
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| T |
23675596 |
aggagtcggaa |
23675606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26458072 - 26457869
Alignment:
| Q |
1 |
gaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatcttt |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
26458072 |
gaaagatggaaatgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatcttt |
26457973 |
T |
|
| Q |
101 |
tattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtgggattatgaataggacaa |
200 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| | |
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| T |
26457972 |
tattgatgagaatttgaaggaggttaatctgaagatgaaagaaatgacaatcaaagatcaaaaggaggttggaaatggggtgggattatgaataggacta |
26457873 |
T |
|
| Q |
201 |
agga |
204 |
Q |
| |
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|||| |
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| T |
26457872 |
agga |
26457869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 27641170 - 27641346
Alignment:
| Q |
1 |
gaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| ||| |||||||||| ||||||||||||||| || | | | |
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| T |
27641170 |
gaaagaaggaaatgaccaatatcattcatcatttcattcataccacagaatttaatggatatttaatgagcaaacctgatcttaatgatttgtcctatgt |
27641269 |
T |
|
| Q |
101 |
tattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatg |
177 |
Q |
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||||||||||||||||| |||||| ||| |||||||||| |||| |||| ||||| ||||||||||||||||| |
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|
| T |
27641270 |
tattgatgagaatttgagggaggtcaatcaaaagatgaaaggaatgcgaattgaagattgagaggaggttggaaatg |
27641346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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