View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_33 (Length: 222)
Name: NF4228_low_33
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_33 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55262886 - 55263107
Alignment:
| Q |
1 |
ccaggaattggccctggttgcagagtgatctccccaccaagctcttgtgtgactacgttgactacatcagcactcttgtagacatcatcagtaccaatgg |
100 |
Q |
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| T |
55262886 |
ccaggaattggccctggttgcagagtgatctcccctccaagctcttgtgtgactaggttgactacatcagcactcttgtagacatcatcagtaccaatgg |
55262985 |
T |
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| Q |
101 |
caatctgttatagacacatgaaacatattttaccatcgatggtacagaaacacgaagaaatctagtttaagcttcaaggtcaaataatttaacttatgaa |
200 |
Q |
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| T |
55262986 |
caatctgttatagacacatgaaacatattttaccatcaatggtacataaacacgaagaaagctagtttaagcttcaaggtcatataatttaacttatgaa |
55263085 |
T |
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| Q |
201 |
ctaacctgtgcataagcagttc |
222 |
Q |
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| T |
55263086 |
ctaacctgtgcataagcagttc |
55263107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 55269753 - 55269971
Alignment:
| Q |
4 |
ggaattggccctggttgcagagtgatctccccaccaagctcttgtgtgactacgttgactacatcagcactcttgtagacatcatcagtaccaatggcaa |
103 |
Q |
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| T |
55269753 |
ggaattggccctggttgccgagtgatcttccctccaagctcttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaa |
55269852 |
T |
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| Q |
104 |
tctgttatagacacatgaaacatattttaccatcgatggtacagaaacacgaagaaatctagtttaagcttcaaggtcaaataatttaacttatgaacta |
203 |
Q |
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| T |
55269853 |
tctgtcatagacacatgaaacatattttaccattaacaggacagagctgcgcagaaagctagtttaagcttcaaggtcatataatttaacttatgaacta |
55269952 |
T |
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| Q |
204 |
acctgtgcataagcagttc |
222 |
Q |
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| T |
55269953 |
acctgtgcataagcagttc |
55269971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8300913 - 8301029
Alignment:
| Q |
1 |
ccaggaattggccctggttgcagagtgatctccccaccaagctcttgtgtgactacgttgactacatcagcactcttgtagacatcatcagtaccaatgg |
100 |
Q |
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||||| ||||||||||||||| || |||| ||| |||| ||||| ||| ||| |||||||| || ||||||||||| |||||||| || |||| | |
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| T |
8300913 |
ccagggattggccctggttgcctggtaatcttccctccaaattcttgagtggctaggttgactaactcggcactcttgtatacatcatcggtgccaacag |
8301012 |
T |
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| Q |
101 |
caatctgttatagacac |
117 |
Q |
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| T |
8301013 |
caacctgttatatacac |
8301029 |
T |
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