View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4228_low_36 (Length: 201)
Name: NF4228_low_36
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 2789278 - 2789437
Alignment:
| Q |
19 |
catagggtgggaaaagtaactcnnnnnnnttgatttattttagaggcatgacctatagctataaaaagcccataaacaccaaaccaagtcatcctctgta |
118 |
Q |
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| T |
2789278 |
catagggtgggaaaagtaactcaaaaaaattgatttattttagaggcatgacctatagctgtaaaaagcccataaacaccaaaccaagtcatcctctgta |
2789377 |
T |
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| Q |
119 |
gcggtttaccacgaagacctagaactcaaatcaatcatcaatcaaaatcgaaaatcttcg |
178 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789378 |
gcggtttaccgcgaagacctagaactcaaatcaatcatcaatcaaaatcgaaaatcttcg |
2789437 |
T |
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