View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4228_low_7 (Length: 435)

Name: NF4228_low_7
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4228_low_7
NF4228_low_7
[»] chr7 (1 HSPs)
chr7 (8-400)||(16430644-16431036)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-400)||(20626-21018)
[»] chr4 (1 HSPs)
chr4 (103-395)||(37962583-37962876)
[»] chr5 (1 HSPs)
chr5 (397-433)||(40799227-40799263)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 16431036 - 16430644
Alignment:
Q  8 cgaagaaaatgaaagaaaagaaaaggatcaaagttgtgatttctnnnnnnngattgaacttttaaaacaggtgagaagaaaattatataatcaaagtaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||| || ||||||||||| |||||||||||||    
T  16431036 cgaagaaaatgaaagaaaagaaaaggatcaaagttgtgatttctaaaaaaagattgaactttttaaacaggggacaagaaaattatttaatcaaagtaat 16430937  T
Q  108 attacaaaattcatttaatcaaagtttctcttttagcagaaaattatttcagagcatctaatcttttaaatcatgaatgggaatataacaagttatatat 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16430936 attacaaaattcatttaatcaaagtttctcttttagtagaaaattatttcagagcatctaatcttttaaatcatgaatgggaatataacaagttatatat 16430837  T
Q  208 gagaagagaaagaagcaaactagttgagtatcaaaccaacacaataatgtggtaaactttacaaaataaaaacatttgctttgctcgtaatcaaacttac 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16430836 gagaagagaaagaagcaaactagttgagtatcaaaccaacagaataatgtggtaaactttacaaaataaaaacatttgctttgctagtaatcaaacttac 16430737  T
Q  308 aaaaatcacattgctattctgttcgtataactcataccggtcacgaaatcaaaacaggccaatactaatactaactagtaggcatacatatga 400  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16430736 aaaaagcacattgctattttgttcatattactcataccggtcacaaaatcaaaacaggccaatactaatactaactagtaggcatacatatga 16430644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 21018 - 20626
Alignment:
Q  8 cgaagaaaatgaaagaaaagaaaaggatcaaagttgtgatttctnnnnnnngattgaacttttaaaacaggtgagaagaaaattatataatcaaagtaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||| || ||||||||||| |||||||||||||    
T  21018 cgaagaaaatgaaagaaaagaaaaggatcaaagttgtgatttctaaaaaaagattgaactttttaaacaggggacaagaaaattatttaatcaaagtaat 20919  T
Q  108 attacaaaattcatttaatcaaagtttctcttttagcagaaaattatttcagagcatctaatcttttaaatcatgaatgggaatataacaagttatatat 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20918 attacaaaattcatttaatcaaagtttctcttttagtagaaaattatttcagagcatctaatcttttaaatcatgaatgggaatataacaagttatatat 20819  T
Q  208 gagaagagaaagaagcaaactagttgagtatcaaaccaacacaataatgtggtaaactttacaaaataaaaacatttgctttgctcgtaatcaaacttac 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20818 gagaagagaaagaagcaaactagttgagtatcaaaccaacagaataatgtggtaaactttacaaaataaaaacatttgctttgctagtaatcaaacttac 20719  T
Q  308 aaaaatcacattgctattctgttcgtataactcataccggtcacgaaatcaaaacaggccaatactaatactaactagtaggcatacatatga 400  Q
    ||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  20718 aaaaagcactttgctattttgttcatattactcataccggtcacaaaatcaaaacaggccaatactaattctaactagtaggcatacatatga 20626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 103 - 395
Target Start/End: Complemental strand, 37962876 - 37962583
Alignment:
Q  103 gtaatattacaaaattcatttaatcaaagtttctcttttagcagaaaattatttcagagcatctaatcttttaaa-tcatgaatgggaatataacaagtt 201  Q
    ||||||||||||||||||||||| |||||||||||||  | || |||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||    
T  37962876 gtaatattacaaaattcatttaagcaaagtttctctt--accacaaaattatttcagaacatctaatctgttaaaatcataaatgggaatataacaagtt 37962779  T
Q  202 atatatgagaagagaaagaagcaaactagttgagtatcaaaccaacacaataatgtggtaaactttacaaaataaaaacatttgctttgctcgtaatcaa 301  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||  |    
T  37962778 atatatgagaagggaaagacacaaactagttgagtatcaaaccaacacaataatgtggtaaactttacaaaataaaaacattcgttttgctcgtaattga 37962679  T
Q  302 acttacaaaaatcacattgctattctgttcgtataa--ctcataccggtcacgaaatcaaaacaggccaatactaatactaactagtaggcataca 395  Q
    ||||||||||| |||||| ||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||    
T  37962678 acttacaaaaaccacattactattttgtttgtataactctcataccggtcacgaaattaaaacaggccaatactaatactaaccagtggacataca 37962583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 40799227 - 40799263
Alignment:
Q  397 atgaagaaggggaaacgggaggaagaagatggaacaa 433  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40799227 atgaagaaggggaaaagggaggaagaagatggaacaa 40799263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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