View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4228_low_9 (Length: 411)
Name: NF4228_low_9
Description: NF4228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4228_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 101 - 392
Target Start/End: Complemental strand, 27128777 - 27128476
Alignment:
| Q |
101 |
ttatagtagataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaattaacgatcgaagtaacaaatt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27128777 |
ttatagcagataacttataagttagcttatatccgataacgaataagataacttattgaatttttaatgtttagtaaattaacgatcgaagtaataaatt |
27128678 |
T |
|
| Q |
201 |
atatcagtatatact----------ttttcatgttaggctgtagtcaatgaattataaccaaacaccctaccctcacaccttccattcagaatcatagag |
290 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27128677 |
atatcagtatatactagtatatactttttcatgttaggctgtagtcaatgaattataaccaaacaccctaccctcacaccttccattcagaatcatagag |
27128578 |
T |
|
| Q |
291 |
taagttgtaaaggataaggagaaaattagttggtattagtggtacataattaatggcctttaaaaataaattgcaatccctttgttgttgatatgctaaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27128577 |
taagttgtaaaggataaggagaaaatgagttggtattagtggtacataattaatggcctttaaaaataaattgcaatccctttgttgttgatatgctaaa |
27128478 |
T |
|
| Q |
391 |
gg |
392 |
Q |
| |
|
|| |
|
|
| T |
27128477 |
gg |
27128476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27128843 - 27128779
Alignment:
| Q |
1 |
ttgtgctattgcgtgttttcttttccttagaattagaatgtttttcttccaacatggaagatgaa |
65 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27128843 |
ttgtgctattgcgtgttttcttttctttagaattagaatgtttttcttccaacatggaagatgaa |
27128779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 32603058 - 32602980
Alignment:
| Q |
100 |
cttatagtagataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaa |
178 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||| |||||| || || ||||||||| |||||||||||||| |
|
|
| T |
32603058 |
cttatagtagatgacttataagttaacttatagccgatagcgaataaattagctgattgaatttgtagtgtttagtaaa |
32602980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 20873024 - 20873091
Alignment:
| Q |
110 |
ataacttataagttagcttatatccgataatgaataagataacttattgaatttttagtgtttagtaaa |
178 |
Q |
| |
|
|||||||||||||||||||||| | |||| | ||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
20873024 |
ataacttataagttagcttataactgatag-gcataagttagcttattgaatttttagtgtttggtaaa |
20873091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University