View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4229_high_10 (Length: 274)
Name: NF4229_high_10
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 26454341 - 26454088
Alignment:
| Q |
14 |
atcagtaagtttggtatgtattccattgagctggtaaaataaataaa-taaaa------tgttaagttatttcattgatgcttacttacatgtcataaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26454341 |
atcagtaagtttggtatgtattccattgagctggtaaaataaataaaataaaaaaagaatgttaagttattccattgatgcttacttacatgtcataaaa |
26454242 |
T |
|
| Q |
107 |
ttaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaattcatcgctacccttcttcgcaggccataacccgtgaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454241 |
ttaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaattcatcgctacccttcttcgcaggccataacccgtgaatt |
26454142 |
T |
|
| Q |
207 |
ataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatcttta |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454141 |
ataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatcttta |
26454088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University