View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_high_11 (Length: 249)
Name: NF4229_high_11
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48308623 - 48308864
Alignment:
| Q |
1 |
attagttggaaaagaaaaggaagaagaaagagtagttgaagctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcttgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48308623 |
attagttggaaaagaaaaggaagaagaaagagtagttgaagctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcctgtta |
48308722 |
T |
|
| Q |
101 |
caacaacttggtagcatgtgcttgtaattcatacgtgactttttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48308723 |
caacaacttggtagcatgtgcttgtaattcatacgtgactttttattatgaagtgcacaaccacatttacggtggtaaggtctcttttcaaaggtattgt |
48308822 |
T |
|
| Q |
201 |
catagccagatatgcttccttcatgcaatgaccagaataatc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
48308823 |
catagccagatatgcttccttcatgcaatgaccagaataatc |
48308864 |
T |
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