View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_high_2 (Length: 885)
Name: NF4229_high_2
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 3238779 - 3239275
Alignment:
| Q |
13 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
112 |
Q |
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| T |
3238779 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
3238878 |
T |
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| Q |
113 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
212 |
Q |
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| T |
3238879 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
3238978 |
T |
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| Q |
213 |
gttttcgatannnnnnncaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
312 |
Q |
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| T |
3238979 |
gttttcgatatttttttcaggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatt |
3239078 |
T |
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| Q |
313 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttc |
412 |
Q |
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| T |
3239079 |
ttaattttcctaaagggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttc |
3239178 |
T |
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| Q |
413 |
ataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaaagttaaatgcacatcctatatcgag |
511 |
Q |
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| T |
3239179 |
ataataacaattagttttacatttttggtataaaacaccatatgggttttgtatcatccacaaatcttatctaa--gtaaatacacatcctatatcgag |
3239275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 230 - 438
Target Start/End: Original strand, 3243141 - 3243348
Alignment:
| Q |
230 |
caggcggattgttatgaatccaaaagggagcaagaacaacccaggttacttgtcattgtcaatttatttgaatgttgacaatttta---attttcctaaa |
326 |
Q |
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||||||||||||||||||||||||||||| | |||||||| | |||||||||||||| |||||| || | ||||| || ||| ||||| ||||| |
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| T |
3243141 |
caggcggattgttatgaatccaaaagggaacgagaacaactctggttacttgtcattatcaattctttcggttgttgctgatattactgatttttctaaa |
3243240 |
T |
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| Q |
327 |
gggtggagaagatatgtatgtaaatcttgagttggctcttacaaatcaattcagtgccttgctaacaattgcaaaaggtatgtttcataataacaattag |
426 |
Q |
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| T |
3243241 |
gactggaaaagatatg----taaatcttgagttggctcttactaatcaagccaatgccttgctcacaattgtcaaaggtatgtttcatattaacaattgc |
3243336 |
T |
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| Q |
427 |
ttttacattttt |
438 |
Q |
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| T |
3243337 |
ttttacattttt |
3243348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
48 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
121 |
Q |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 683 - 753
Target Start/End: Original strand, 3243501 - 3243571
Alignment:
| Q |
683 |
atcagaaaccgaacaggagttcaaagaaagtaattattattggagtgtcgacaagttcgtacatttggatg |
753 |
Q |
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| T |
3243501 |
atcagaaactgaacaggagctcaatgcaagtaattattgctggagtgtcgacaagttcatacatttggatg |
3243571 |
T |
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