View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4229_high_6 (Length: 353)
Name: NF4229_high_6
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 5230993 - 5231328
Alignment:
| Q |
2 |
ttctaagatctgattatacaaatatatgatctagaaacttgattttaatctcatatctttatatttgattgtagtaccatggaggaactaattttggtcg |
101 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5230993 |
ttctaagatctcattatacaaatatatgatctagaaacttgattttaatctcatatctttatatttgattgtagtaccatggaggaactaattttggtag |
5231092 |
T |
|
| Q |
102 |
aacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgcagtaaggtttaaattgtttcatggtttgagtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5231093 |
aacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgcagtaaggtttaaattgtttcatggtttgagtt |
5231192 |
T |
|
| Q |
202 |
acaacctaacaattagaaaatttttaacgcctttcaaaatattaggacttccaaatgaaccaaaatggagccatttgaaaaatttacataaagcaataaa |
301 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5231193 |
ataacctaacaattagaaaaattttaacgcctttcaaaatattaggacttccaaatgaaccaaaatggagccatttgaaaaatttacataaagcaataaa |
5231292 |
T |
|
| Q |
302 |
acaatgtgagccagctttgatttctgtggatcctac |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5231293 |
acaatgtgagccagctttgatttctgtggatcctac |
5231328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 7346067 - 7346105
Alignment:
| Q |
127 |
acaagctatgattatgatgctcctattgatgaatatggt |
165 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7346067 |
acaagctatgactatgatgctccaattgatgaatatggt |
7346105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 17126621 - 17126716
Alignment:
| Q |
74 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgc |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| ||||| |||||||| || || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
17126621 |
agtaccatggaggaactaattttggaagaacatcttctggccttttcattgccacgagttacgattatgatgctcctatcgatgaatatggtatgc |
17126716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 42988787 - 42988695
Alignment:
| Q |
74 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggta |
166 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||| || |||||| ||| ||||| ||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
42988787 |
agtatcatggaggaacaaattttggtagaacagctggtggtcctttcattgctacaagctatgactatgatgcacctcttgatgaatatggta |
42988695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 5452874 - 5452968
Alignment:
| Q |
74 |
agtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatg |
168 |
Q |
| |
|
|||| ||||| ||||| |||||||| |||| || |||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
5452874 |
agtatcatggtggaacaaattttggaagaaccgctggtggtccttttattgccacaagctatgattatgatgcacctcttgatgaatacggtatg |
5452968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 52647347 - 52647440
Alignment:
| Q |
73 |
tagtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggta |
166 |
Q |
| |
|
||||||||||||||||| |||||||| ||| || || | |||| || ||| | ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
52647347 |
tagtaccatggaggaaccaattttggacgatcagctgggggtccattcatttctacaagctatgactatgatgctccaattgatgaatatggta |
52647440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 22014515 - 22014418
Alignment:
| Q |
73 |
tagtaccatggaggaactaattttggtcgaacatctagtggtctttttattgccacaagctatgattatgatgctcctattgatgaatatggtatgca |
170 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| | |||| | ||| ||| | || || |||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
22014515 |
tagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttatgattatgatgcacccattgatgagtatggtatgca |
22014418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University