View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_10 (Length: 288)
Name: NF4229_low_10
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 39809421 - 39809154
Alignment:
| Q |
13 |
atgtatgttgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
112 |
Q |
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| T |
39809421 |
atgtatattgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
39809322 |
T |
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| Q |
113 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809321 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
39809222 |
T |
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| Q |
213 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809221 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgct |
39809154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 69 - 242
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
69 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
168 |
Q |
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||||| ||||||||| || |||||||||||||||||||||||||||||||| | ||||| || | ||||||||| || || || ||||| ||||||| | |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
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| Q |
169 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
242 |
Q |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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