View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_11 (Length: 277)
Name: NF4229_low_11
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 9384826 - 9384580
Alignment:
| Q |
16 |
caaagggcattgagattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgt |
115 |
Q |
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| T |
9384826 |
caaagggcattgagattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgt |
9384727 |
T |
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| Q |
116 |
tgtgtttgaatatgttagctcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccat |
215 |
Q |
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| T |
9384726 |
tgtgtttgaatatgttaactcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccat |
9384627 |
T |
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| Q |
216 |
gtttgaatgagagcttcatgttttagaattatattattggacctttg |
262 |
Q |
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| T |
9384626 |
gtttgaacgagagcttcatgttttagaattatattattggacctttg |
9384580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 31947912 - 31947700
Alignment:
| Q |
16 |
caaagggcattgagattgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgt |
115 |
Q |
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| T |
31947912 |
caaagggcattaagattgtcagagacattgaatgttaatgttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgt |
31947813 |
T |
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| Q |
116 |
tgtgtttgaatatgttagctcattaggctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccat |
215 |
Q |
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| T |
31947812 |
tgtgtttaaatatgttagctcattaggctaacataggtagagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtaaaattcaatccat |
31947713 |
T |
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| Q |
216 |
gtttgaatgagag |
228 |
Q |
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| T |
31947712 |
gtttgaatgagag |
31947700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 31455574 - 31455655
Alignment:
| Q |
32 |
tgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagt |
113 |
Q |
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| T |
31455574 |
tgttagagacattgaatgttaatgtttgtggacttgaaggtggattggattgcatttatagatgtttagtacgaaatagagt |
31455655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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