View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_15 (Length: 247)
Name: NF4229_low_15
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44836992 - 44837235
Alignment:
| Q |
1 |
agaaacatctaataatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatgttacaataacttaat |
100 |
Q |
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| T |
44836992 |
agaaacatctaataatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatgttacaataacgtaat |
44837091 |
T |
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| Q |
101 |
tgagtgtcaaggaccaatacttcaaagttacaaacaacattctgagttccaaattcttaaattttaaaaagttatcatttcggcactattcattttgtct |
200 |
Q |
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| T |
44837092 |
tgagtgtcaaggaccaatacttcaaagttacaaacaacattctgagttccaaatttttaaattttaataagttattatttcagcactattcattttgtct |
44837191 |
T |
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| Q |
201 |
ttctattttcttccggtgtttatagttgcatgcacctatgctac |
244 |
Q |
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| T |
44837192 |
ttctattttcttcccatgtttatagttgcatgcacctgtgctac |
44837235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44848615 - 44848736
Alignment:
| Q |
1 |
agaaacatctaataatccaattgcacttcacacacaagggtttgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatgttacaataacttaat |
100 |
Q |
| |
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||||| |||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| | || |
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| T |
44848615 |
agaaatatctaataatccaattgcaccccatacagaagggtgtgcaactcgcaatttgtaaaaataggtcaatcaaattaaaatcttgcaataccgcaag |
44848714 |
T |
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| Q |
101 |
tgagtgtcaaggaccaatactt |
122 |
Q |
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| T |
44848715 |
tgagtgtcaaggagcaatactt |
44848736 |
T |
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