View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_17 (Length: 238)
Name: NF4229_low_17
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43174527 - 43174745
Alignment:
| Q |
1 |
tattcaattaattttattgcttgagttgttcaaaatatcatcttggtgagaatgaaagcatgtaaagagtaannnnnnnnnnnnnnnnnnnnnnccgaag |
100 |
Q |
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| T |
43174527 |
tattcaattaattttattgcttgagttgttcaaaatatcatcttggtgagaatgaaagcatgtaaagagtaaattttttatttatttttatttaccgaag |
43174626 |
T |
|
| Q |
101 |
aaacttggaaggaaatcagctagcaggatcaattccaatacaactccttgtgcgttcagaaaatagtatgctcgaatccaagtatgttctatttcaagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43174627 |
aaacttggaaggaaatcagctagcaggatcaattccagtacaactccttgtgcgttcagaaaatagtatgctcgaatccaagtatgttctatttcaagtt |
43174726 |
T |
|
| Q |
201 |
ttacttttacatattttat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
43174727 |
ttacttttacatattttat |
43174745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 43165478 - 43165581
Alignment:
| Q |
97 |
gaagaaacttggaaggaaatcagctagcaggatcaattccaatacaactccttgtgcgttcagaaaatagtatgctcgaatccaagtatgttctatttca |
196 |
Q |
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|||||||| | |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||| || |||||| |
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| T |
43165478 |
gaagaaaccttgaaggaaatcagttatcaggagcaattccaatacaactccttgtgcgttcagagaatagtacactccaattcaagtatg-tcaatttca |
43165576 |
T |
|
| Q |
197 |
agttt |
201 |
Q |
| |
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||||| |
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| T |
43165577 |
agttt |
43165581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 43222272 - 43222168
Alignment:
| Q |
97 |
gaagaaacttggaaggaaatcagctagcaggatcaattccaatacaactccttgtgcgttcagaaaatagtatgctcgaatccaagtatgttctatttca |
196 |
Q |
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|||||||| | |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||| |||| |||||| |
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| T |
43222272 |
gaagaaaccttgaaggaaatcagttatcaggagcaattccaatacaactccttgtgcgttcagagaatagtacactccaattcaagtgcgttcgatttca |
43222173 |
T |
|
| Q |
197 |
agttt |
201 |
Q |
| |
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||||| |
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|
| T |
43222172 |
agttt |
43222168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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