View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_18 (Length: 237)
Name: NF4229_low_18
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44836870 - 44836654
Alignment:
| Q |
1 |
aatacgcttttgatagatgaacttaatcgtttggcttgtaaatgaaaatgttagaaatgct-tgatggccatgtggagagatgcttggcctactgcttgc |
99 |
Q |
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| T |
44836870 |
aatacgcttttgatagatgaacttaatcgtttggcttgtaaatgaaaatgttagaaatgccatgatggccatgtggagagatgcttggcctactgcttgc |
44836771 |
T |
|
| Q |
100 |
cagtttttatggaagtaaagtagaacaataggagcattcatgactctttgcctccagactcctatattatataattggagggttattgctcatctttttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44836770 |
cagtttttatggaagtaaagtagaacaataggagcattcatgactctttgcctccagactcct-----atataattggagggttattgctcatctttttt |
44836676 |
T |
|
| Q |
200 |
atagttgcttgaaaggggagag |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
44836675 |
atagttgcttgaaaggggagag |
44836654 |
T |
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