View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4229_low_19 (Length: 234)

Name: NF4229_low_19
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4229_low_19
NF4229_low_19
[»] chr7 (10 HSPs)
chr7 (61-138)||(25612893-25612970)
chr7 (61-138)||(37518047-37518124)
chr7 (1-39)||(25612992-25613030)
chr7 (61-129)||(19225391-19225459)
chr7 (61-129)||(43186083-43186151)
chr7 (61-128)||(47202785-47202852)
chr7 (61-138)||(9152089-9152166)
chr7 (61-138)||(42925424-42925501)
chr7 (61-128)||(7115063-7115130)
chr7 (61-138)||(42864885-42864963)
[»] chr2 (13 HSPs)
chr2 (61-129)||(5507718-5507786)
chr2 (62-138)||(35251231-35251307)
chr2 (61-138)||(17474577-17474654)
chr2 (61-138)||(25217553-25217630)
chr2 (61-138)||(33452221-33452298)
chr2 (61-138)||(34517401-34517478)
chr2 (61-138)||(38065356-38065433)
chr2 (61-138)||(44465519-44465596)
chr2 (66-138)||(25715764-25715835)
chr2 (61-129)||(30763948-30764016)
chr2 (61-138)||(42894675-42894752)
chr2 (66-138)||(9847085-9847156)
chr2 (66-138)||(17133028-17133100)
[»] chr8 (9 HSPs)
chr8 (61-138)||(8885236-8885313)
chr8 (66-138)||(24627783-24627854)
chr8 (61-127)||(28423719-28423785)
chr8 (61-138)||(11698100-11698177)
chr8 (61-138)||(36980867-36980944)
chr8 (73-138)||(42280675-42280740)
chr8 (65-138)||(33472279-33472352)
chr8 (2-38)||(1374183-1374219)
chr8 (61-129)||(7981814-7981882)
[»] chr3 (12 HSPs)
chr3 (61-138)||(29048628-29048705)
chr3 (61-129)||(28873304-28873372)
chr3 (61-128)||(47302317-47302384)
chr3 (61-138)||(14828700-14828777)
chr3 (66-138)||(45244600-45244671)
chr3 (61-138)||(51258702-51258779)
chr3 (74-138)||(500970-501034)
chr3 (72-126)||(47739729-47739783)
chr3 (61-122)||(19419716-19419777)
chr3 (61-138)||(34821127-34821204)
chr3 (61-138)||(50716551-50716628)
chr3 (61-138)||(50796219-50796296)
[»] chr4 (13 HSPs)
chr4 (61-129)||(47456911-47456979)
chr4 (61-138)||(25752227-25752304)
chr4 (73-130)||(52089572-52089629)
chr4 (61-138)||(54631276-54631353)
chr4 (61-129)||(7931962-7932030)
chr4 (61-129)||(25538771-25538839)
chr4 (61-129)||(39118453-39118521)
chr4 (87-138)||(48318848-48318899)
chr4 (80-138)||(38536496-38536554)
chr4 (62-124)||(42497733-42497795)
chr4 (65-138)||(4936506-4936579)
chr4 (61-129)||(3703048-3703116)
chr4 (61-129)||(46440065-46440133)
[»] chr1 (11 HSPs)
chr1 (61-129)||(6223546-6223613)
chr1 (61-128)||(18583338-18583405)
chr1 (61-138)||(24472612-24472689)
chr1 (61-138)||(27795128-27795205)
chr1 (61-138)||(40907718-40907795)
chr1 (61-125)||(44572897-44572961)
chr1 (61-128)||(49786566-49786633)
chr1 (61-138)||(3561119-3561196)
chr1 (61-129)||(45046643-45046711)
chr1 (61-129)||(34006559-34006627)
chr1 (66-130)||(43319077-43319140)
[»] chr6 (7 HSPs)
chr6 (61-138)||(4508086-4508163)
chr6 (61-129)||(5639159-5639227)
chr6 (61-127)||(3717077-3717143)
chr6 (61-127)||(24604156-24604222)
chr6 (61-138)||(237096-237173)
chr6 (73-138)||(21514815-21514880)
chr6 (61-125)||(2539749-2539813)
[»] chr5 (12 HSPs)
chr5 (61-138)||(32841755-32841832)
chr5 (61-138)||(14112125-14112202)
chr5 (61-138)||(26093719-26093796)
chr5 (61-138)||(37183565-37183642)
chr5 (61-138)||(40619769-40619846)
chr5 (68-128)||(21070632-21070692)
chr5 (61-124)||(7884454-7884517)
chr5 (61-138)||(6156991-6157068)
chr5 (61-138)||(33487871-33487948)
chr5 (61-129)||(26898596-26898664)
chr5 (61-129)||(38372561-38372629)
chr5 (66-138)||(38640898-38640969)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 25612970 - 25612893
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25612970 tcaaggatcaagactcccctagaagagacttcttagagaacaccgcccctcaaaatccaaaatttcatcaattagacc 25612893  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 37518124 - 37518047
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||||||||| |||||||||| || || |||||||||||||||||||||||||||  |||||||    
T  37518124 tcaaggaccatgactcccatagaagagacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 37518047  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25613030 - 25612992
Alignment:
Q  1 ttttcagactacttgatcaagttgctccgaaacttttct 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25613030 ttttcagactacttgatcaagttgctccgaaacttttct 25612992  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 19225459 - 19225391
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || |||||||||||||   |||||||| || || |||||||||||||||||||||||||||    
T  19225459 tcaaggaacatgactcccatagaaggaacttcttacaggactccgcccctcaaaatccaaaattccatc 19225391  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 43186083 - 43186151
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||||||||||||||||| |||||  |||||||||  | || |||||||| ||||||||||||||||||    
T  43186083 tcaaggatcaagactcccttagaagggacttcttacgggactccgcccctaaaaatccaaaattccatc 43186151  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 47202785 - 47202852
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccat 128  Q
    ||||||| || |||||||||||||  |||||||||  | || ||||||||||||||||||||||||||    
T  47202785 tcaaggaccatgactcccatagaagggacttcttaagggactccgcccctcaaaatccaaaattccat 47202852  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 9152089 - 9152166
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  9152089 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 9152166  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 42925501 - 42925424
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  42925501 tcaaggaccatgactcccttagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 42925424  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 7115130 - 7115063
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccat 128  Q
    |||||||||||||||||| |||||  |||||||||  | || ||  ||||||||||||||||||||||    
T  7115130 tcaaggatcaagactcccttagaagggacttcttacgggactccttccctcaaaatccaaaattccat 7115063  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 42864963 - 42864885
Alignment:
Q  61 tcaaggatcaagactcccatagaaa-agacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||| ||||||||||  | || ||||||||||||||||||||||| |||  |||||||    
T  42864963 tcaaggaccatgactcccttagaaagagacttcttatgggactccgcccctcaaaatccaaaattcaatcgtttagacc 42864885  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 5507718 - 5507786
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||||||||| ||||||||||||| | ||||||||  |||| |||||||||||||||||||||||||||    
T  5507718 tcaaggatcatgactcccatagaagaaacttcttatggaactccgcccctcaaaatccaaaattccatc 5507786  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 35251231 - 35251307
Alignment:
Q  62 caaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||||||||||||||  ||||||||   ||| |||||||| ||||||||||||| ||||  |||||||    
T  35251231 caaggatcaagactcccatagaaagtacttcttatgaaactccgccccttaaaatccaaaatttcatcgtttagacc 35251307  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 17474654 - 17474577
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| ||||| | ||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  17474654 tcaaggaccatgactcccttagaagaaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 17474577  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 25217630 - 25217553
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || |||||||||||||  |||||||||  | || ||||||||||||||||||||||| |||  |||||||    
T  25217630 tcaaggaccatgactcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacc 25217553  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 33452298 - 33452221
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || |||||||||| ||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  33452298 tcaaggaccatgactcccataaaagcgacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 33452221  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 34517401 - 34517478
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| |||||||||||||  |||||||||  | |  |||| ||||||||||||||||||||||  |||||||    
T  34517401 tcaaggatcatgactcccatagaagggacttcttacgggattccgcacctcaaaatccaaaattccatcgtttagacc 34517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 38065433 - 38065356
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| ||||||  ||||| ||||||||||  | || |||||||||||||||||||||| ||||  |||||||    
T  38065433 tcaaggatcatgactcctgtagaagagacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 38065356  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 44465596 - 44465519
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  44465596 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcttttagacc 44465519  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 25715764 - 25715835
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| ||||| ||| ||||||  | || |||||| ||||||||||||||||||||| |||||||    
T  25715764 gatcaagactcccttagaagagatttcttatgggactccgccc-tcaaaatccaaaattccatcatttagacc 25715835  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 30763948 - 30764016
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||| ||||||||||| |||||||  |||||||||  | || |||||||||||||||||||||| ||||    
T  30763948 tcaaagatcaagactctcatagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatc 30764016  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 42894675 - 42894752
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||   ||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  42894675 tcaaggaccatgactcccttagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 42894752  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 9847156 - 9847085
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| ||||| ||||||||||  | || |||| | |||||||||||||| |||||| |||||||    
T  9847156 gatcaagactcccttagaagagacttcttacgggactccgctc-tcaaaatccaaaatcccatcatttagacc 9847085  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 17133028 - 17133100
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| ||||| |||||| |||  | || ||| |||||||||||||||||| ||||  |||||||    
T  17133028 gatcaagactcccttagaagagactttttacgggactccgaccctcaaaatccaaaatttcatcgtttagacc 17133100  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 8885313 - 8885236
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||  ||||||||| || || |||||||||||||||||||||||||||| |||||||    
T  8885313 tcaaggaccatgactcccgtagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcatttagacc 8885236  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 24627783 - 24627854
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| ||||| |||||||||| ||||| ||| ||||||||||||||||||| |||| |||||||    
T  24627783 gatcaagactcccttagaagagacttcttacagaactccg-ccctcaaaatccaaaattctatcatttagacc 24627854  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 28423719 - 28423785
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattcca 127  Q
    |||||||||||||||||| |||||| |||||||||  | || ||  |||||||||||||||||||||    
T  28423719 tcaaggatcaagactcccgtagaaaggacttcttatgggactccatccctcaaaatccaaaattcca 28423785  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 11698177 - 11698100
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || |||||||||||||  ||| |||||  | || |||||||||||||||||||||||||||  |||||||    
T  11698177 tcaaggaccatgactcccatagaagggacgtcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 11698100  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 36980867 - 36980944
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||||||||| |||||  ||||||||| || || |||| ||||||||| |||||| |||||  |||||||    
T  36980867 tcaaggatcaagactcccctagaagggacttcttacaggactccgctcctcaaaattcaaaatcccatcgtttagacc 36980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 42280740 - 42280675
Alignment:
Q  73 actcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||| |||||  ||||||||| || || |||||||||||||||||||||||||||  |||||||    
T  42280740 actcccctagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 42280675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 33472279 - 33472352
Alignment:
Q  65 ggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||||| ||||| ||||||||||  | ||  ||||||||||||| ||||||| ||||  |||||||    
T  33472279 ggatcaagactcccttagaagagacttcttacgggactacgcccctcaaaattcaaaatttcatcgtttagacc 33472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 1374183 - 1374219
Alignment:
Q  2 tttcagactacttgatcaagttgctccgaaacttttc 38  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  1374183 tttcagactacttgatcaaattgctccaaaacttttc 1374219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 7981814 - 7981882
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||| |||||||||||| |||||  || || ||| || ||  ||||||||||||||||||||||||||    
T  7981814 tcaagcatcaagactcccttagaagggatttgttataggacttcgcccctcaaaatccaaaattccatc 7981882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 29048628 - 29048705
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||||||||| |||||| ||||| |||  | || |||||||||||||||||||||||||||  |||||||    
T  29048628 tcaaggatcaagactcccgtagaaaggacttattacgggactccgcccctcaaaatccaaaattccatcgtttagacc 29048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 28873304 - 28873372
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||| ||||| ||||||||||  | || |||||||||||||||||||||||||||    
T  28873304 tcaaggaacatgactcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccatc 28873372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 47302317 - 47302384
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccat 128  Q
    |||||||||| |||||||||||||  |||||||||  | || | ||||||||||||||||||||||||    
T  47302317 tcaaggatcatgactcccatagaagggacttcttacgggactctgcccctcaaaatccaaaattccat 47302384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 14828777 - 14828700
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| |||  ||||| |||||||||| || || |||||  ||||||||||||||||||||  |||||||    
T  14828777 tcaaggatcaagattcctctagaagagacttcttacaggactccgcctttcaaaatccaaaattccatcgtttagacc 14828700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 45244600 - 45244671
Alignment:
Q  66 gatcaagactcccatagaaaagacttctta-gagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| |||||| ||||||||| ||| || ||| |||||||||||||||||||||||| |||||||    
T  45244600 gatcaagactcccttagaaaggacttcttacgag-actccg-ccctcaaaatccaaaattccatcatttagacc 45244671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 51258702 - 51258779
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| ||||||| |||||  |||||||||  | || |||||||||||||||||||||| ||||  |||||||    
T  51258702 tcaaggatcatgactcccgtagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 51258779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 501034 - 500970
Alignment:
Q  74 ctcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  501034 ctcccatagaagggacttcttacggcactccgcccctcaaaatccaaaattccatcgtttagacc 500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 47739783 - 47739729
Alignment:
Q  72 gactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattcc 126  Q
    ||||||||||||| ||||||||| | | || |||||||||||||| |||||||||    
T  47739783 gactcccatagaagagacttctttggggactccgcccctcaaaattcaaaattcc 47739729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 19419716 - 19419777
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaa 122  Q
    ||||||||||||||| |  ||||| |||||||||| || |  ||||||||||||||||||||    
T  19419716 tcaaggatcaagacttctttagaagagacttcttataggattccgcccctcaaaatccaaaa 19419777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 34821204 - 34821127
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||| |||||||  |||||||||  | |  |||||||||||||||||||||||||||  |||||||    
T  34821204 tcaaggaccatgactctcatagaagggacttcttacgggagtccgcccctcaaaatccaaaattccatcgtttagacc 34821127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 50716551 - 50716628
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||  ||||| ||||||||||  | |  |||||||||||||||||||||||||||  |||||||    
T  50716551 tcaaggaccatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 50796296 - 50796219
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||  ||||| ||||||||||  | |  |||||||||||||||||||||||||||  |||||||    
T  50796296 tcaaggaccatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50796219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 47456911 - 47456979
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||||||||||||||||  ||||| ||||||||||  |||| ||| |||||||||||||||||||||||    
T  47456911 tcaaggatcaagactcctctagaagagacttcttatggaactccgtccctcaaaatccaaaattccatc 47456979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 25752304 - 25752227
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| ||||| ||||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  25752304 tcaaggaccatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 25752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 52089572 - 52089629
Alignment:
Q  73 actcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatca 130  Q
    ||||||||||||  |||||||||  | || ||||||||||||||||||||||||||||    
T  52089572 actcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatca 52089629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 54631353 - 54631276
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || |||||||||||||| |||||||||  | || |||| ||||||||| ||||||||||||  |||||||    
T  54631353 tcaaggaccatgactcccatagaaaggacttcttacgggactccgcacctcaaaatacaaaattccatcgtttagacc 54631276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 7931962 - 7932030
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||| |||||  |||||||||  | || |||||||||||||||||||||||||||    
T  7931962 tcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatc 7932030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 25538839 - 25538771
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||| ||||| ||||||||||  | || ||||||||||||||||||||| |||||    
T  25538839 tcaaggaacatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaataccatc 25538771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 39118453 - 39118521
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||||  ||||||||||| ||||||||||||| |  ||||| ||||| ||||||||||||| ||||    
T  39118453 tcaaggattgagactcccataaaaaagacttcttacatgacaccaccccttaaaatccaaaatttcatc 39118521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 48318899 - 48318848
Alignment:
Q  87 gacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||| || || |||||||||||||||||||||||||||  |||||||    
T  48318899 gacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 48318848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 38536496 - 38536554
Alignment:
Q  80 tagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||| |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  38536496 tagaaaggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 38536554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 42497795 - 42497733
Alignment:
Q  62 caaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaatt 124  Q
    ||||||||||||||||||| |||  | ||||||| || || ||||||||||||||| ||||||    
T  42497795 caaggatcaagactcccatggaaggggcttcttacaggactccgcccctcaaaatctaaaatt 42497733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 4936579 - 4936506
Alignment:
Q  65 ggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||||||| ||||| | ||||||||  | || ||| |||||||||||||||||| ||||  |||||||    
T  4936579 ggatcaagactcccttagaagatacttcttatgggactccgtccctcaaaatccaaaatttcatcttttagacc 4936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 3703116 - 3703048
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||| ||||| ||||||| |||||| |||||||||  | || ||| || ||||||||||||||||||||    
T  3703116 tcaaagatcatgactcccttagaaatgacttcttatgggactccgtccttcaaaatccaaaattccatc 3703048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 46440133 - 46440065
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || |||||||| ||||  |||||||||  | || |||||||||||||||||||||| ||||    
T  46440133 tcaaggaccatgactcccaaagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatc 46440065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 6223613 - 6223546
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||||||||| ||||||| ||||| ||||||||||  || |||||||||||||||||||||||||||||    
T  6223613 tcaaggatcatgactcccttagaagagacttcttacgga-caccgcccctcaaaatccaaaattccatc 6223546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 18583405 - 18583338
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccat 128  Q
    ||||||| || ||||||||||||| ||||||||||  | || ||||||||||||||||||||||||||    
T  18583405 tcaaggaccacgactcccatagaagagacttcttacgggactccgcccctcaaaatccaaaattccat 18583338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 24472689 - 24472612
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||||||||||||||  ||||||||   | || |||||| ||||||||||||||| ||||  |||||||    
T  24472689 tcaaggatcaagactcccatagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacc 24472612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 27795128 - 27795205
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| |||||   ||||| |||||||||| || || |||||||||||||||||||||| ||||  |||||||    
T  27795128 tcaaggatcatgactcttgtagaagagacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagacc 27795205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 40907795 - 40907718
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| ||||| |||| ||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  40907795 tcaaggatcatgactctcataaaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 40907718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 44572961 - 44572897
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattc 125  Q
    ||||||| || ||||||||||||| ||||||||||| | || |||||| ||||||| ||||||||    
T  44572961 tcaaggaccatgactcccatagaagagacttcttaggggactccgcccatcaaaattcaaaattc 44572897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 49786566 - 49786633
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttctta-gagaacaccgcccctcaaaatccaaaattccat 128  Q
    ||||||| || ||||||| ||||| |||||||||| |||| | ||||||||||||||||||||||||||    
T  49786566 tcaaggaccatgactcccgtagaagagacttcttatgaga-ctccgcccctcaaaatccaaaattccat 49786633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 3561196 - 3561119
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||| ||||||||||||||||||  ||||||||   || | |||||||||||||| ||||||| ||||  |||||||    
T  3561196 tcaagaatcaagactcccatagaagtgacttcttgtggagctccgcccctcaaaattcaaaatttcatcttttagacc 3561119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 45046711 - 45046643
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttctta-gagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||| |||||  ||||||||| |||| | |||||||||||||||||||||||||||    
T  45046711 tcaaggaccatgactcccttagaagggacttcttatgaga-ctccgcccctcaaaatccaaaattccatc 45046643  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 34006559 - 34006627
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    |||||||||| ||||||| |||||  |||||||||  | || ||| |||||||||||||||||| ||||    
T  34006559 tcaaggatcatgactcccgtagaagggacttcttacgggactccgtccctcaaaatccaaaatttcatc 34006627  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 43319140 - 43319077
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatca 130  Q
    |||||||||| || ||||| ||||||||||  | || |||||| |||||||||||||||||||||    
T  43319140 gatcaagacttccttagaagagacttcttacgggactccgccc-tcaaaatccaaaattccatca 43319077  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 4508163 - 4508086
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || |||||||| |||| ||||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  4508163 tcaaggaccatgactcccacagaagagacttcttaagggactccgcccctcaaaatccaaaattccatcgtttagacc 4508086  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 5639159 - 5639227
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||  ||||| ||||||||||  | || |||||||||||||||||||||||||||    
T  5639159 tcaaggaccatgactcctttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatc 5639227  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 3717143 - 3717077
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattcca 127  Q
    ||||||| || | ||||| ||||| ||||||||||  | || |||||||||||||||||||||||||    
T  3717143 tcaaggaccatggctcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattcca 3717077  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 24604222 - 24604156
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattcca 127  Q
    |||||||||| ||||||| |||||  ||||||||   |||| ||||| |||||||||||||||||||    
T  24604222 tcaaggatcatgactcccttagaagggacttcttgcggaactccgcctctcaaaatccaaaattcca 24604156  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 237096 - 237173
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| ||||| |||| |||||  | |||||||  | || |||||||||||||||||||||||||||  |||||||    
T  237096 tcaaggaccaagaatcccttagaagggtcttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 237173  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 21514880 - 21514815
Alignment:
Q  73 actcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||| |||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  21514880 actcccttagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 21514815  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 2539749 - 2539813
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattc 125  Q
    ||||||| || ||||| |||||||  |||||||||  | || |||||||||||||||||||||||    
T  2539749 tcaaggaccatgactctcatagaagtgacttcttacgggactccgcccctcaaaatccaaaattc 2539813  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 32841832 - 32841755
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| ||||||| |||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  32841832 tcaaggatcatgactcccctagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 32841755  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 14112125 - 14112202
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || || ||||||||||  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  14112125 tcaaggaccatgaatcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 14112202  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 26093719 - 26093796
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||| |||||| ||||   |||||||||  | || || ||||||||||||||||||||||||| |||||||    
T  26093719 tcaaggatcaaaactcccgtagaggggacttcttacgggactcctcccctcaaaatccaaaattccatcatttagacc 26093796  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 37183642 - 37183565
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| |||||  ||| |||||  | || |||||||||||||||||||||||||||| |||||||    
T  37183642 tcaaggaccatgactcccgtagaagggacatcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 37183565  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 40619846 - 40619769
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| |||||| | ||||   ||||||||  | || |||||||||||||||||||||||||||| |||||||    
T  40619846 tcaaggatcatgactccaaaagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 40619769  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 21070632 - 21070692
Alignment:
Q  68 tcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccat 128  Q
    ||||||||||| |||||  |||||||||  | |||| ||||||||||||||||||||||||    
T  21070632 tcaagactcccctagaagggacttcttattggacactgcccctcaaaatccaaaattccat 21070692  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 7884454 - 7884517
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaatt 124  Q
    ||||||| || ||||||| ||||| ||||||||||  |||| ||||||||||||||| ||||||    
T  7884454 tcaaggaccatgactcccgtagaagagacttcttacggaactccgcccctcaaaatctaaaatt 7884517  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 6156991 - 6157068
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||| || ||||||| ||| |  |||||||||  | || |||||||||||||||||||||||||||  |||||||    
T  6156991 tcaaggaccatgactcccgtagtagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 6157068  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 33487871 - 33487948
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    |||||||||| ||||||| |||||  ||||||||   | || |||||||| ||||||||||||||||||  |||||||    
T  33487871 tcaaggatcatgactcccttagaagggacttcttttgggaccccgcccctaaaaatccaaaattccatcgtttagacc 33487948  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 26898664 - 26898596
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || ||||||  |||||  ||||||||| || || |||||||||||||||||||||| ||||    
T  26898664 tcaaggaccatgactcctgtagaagggacttcttacaggactccgcccctcaaaatccaaaatttcatc 26898596  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 38372561 - 38372629
Alignment:
Q  61 tcaaggatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatc 129  Q
    ||||||| || |||| || ||||| ||||||||||  | || || ||||||||||||||||||||||||    
T  38372561 tcaaggaccatgacttccttagaagagacttcttacgggactccacccctcaaaatccaaaattccatc 38372629  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 38640898 - 38640969
Alignment:
Q  66 gatcaagactcccatagaaaagacttcttagagaacaccgcccctcaaaatccaaaattccatcaattagacc 138  Q
    ||||||||||||| || ||| |||||||||  | ||  || |||||||||||||||||||||||| |||||||    
T  38640898 gatcaagactcccttataaatgacttcttacgggactacg-ccctcaaaatccaaaattccatcatttagacc 38640969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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