View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_3 (Length: 485)
Name: NF4229_low_3
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 37 - 475
Target Start/End: Original strand, 3467551 - 3467988
Alignment:
| Q |
37 |
ttgtcgaaatatcatttctcttgtcatatacagtacacactccaaaaatggggaaaaatccttttctgaatatcatttgttttgaattcatataagnnnn |
136 |
Q |
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| T |
3467551 |
ttgtcaaaatatcatttctcttgtcatatacagtacacactccaaaaatggggtaaaatccttttctggatatcatttgttttgaattcacataagaaaa |
3467650 |
T |
|
| Q |
137 |
nnntgataagtttaagctcaagttattgacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcnnnnnnntcatcaacat |
236 |
Q |
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| T |
3467651 |
aa-tgataagtttaagctcaagttattgacagtgtcgtattcctaaagcaatctacctcaactttttcacattcgaaccagtcaaaaaaatcatcaacat |
3467749 |
T |
|
| Q |
237 |
tatccctctccctcaaagaataaaaacaaaaagtcacattacttgatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaa |
336 |
Q |
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| T |
3467750 |
tatccctctccctcaaagaataaaaacaaaaagtcacattactagatagcaggtagatattgtgcacaaatgctgcacataatcgaatagaaaaaagaaa |
3467849 |
T |
|
| Q |
337 |
attggtttctttacccatttgagaacaaaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgtgattcctcgagatgt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
3467850 |
attggtttctttacccatttgagaacaaaaaacaaatcttgcttatgtaggcagaatatccgttttacctacatacatcacatgcgattccttgagatgt |
3467949 |
T |
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| Q |
437 |
gatagcaacctaagaattgttatttagttgatgatgatg |
475 |
Q |
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| T |
3467950 |
gatagcaacctaagaattattatttagttgatgatgatg |
3467988 |
T |
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