View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4229_low_5 (Length: 382)
Name: NF4229_low_5
Description: NF4229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4229_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 48308423 - 48308068
Alignment:
| Q |
1 |
tgtatggacgtacgctattaatttggttcatgcacatttctcacctaaggttactctgctttcatcgttgatggtattagaaattagaaactccattttc |
100 |
Q |
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| T |
48308423 |
tgtatggacgtacgctattaatttggttcatgaacatttctcacctaaggttactctgctttcatcgttgatggtattagaaattagaaactccattttc |
48308324 |
T |
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| Q |
101 |
ttgaaaattgttattatattatatggtaatggaatttcctttgtatgcatctattcttagttcttgatctctgcctgtgggctcttcatcttcatcttct |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48308323 |
ttgaaaattattattatattatatggtaatggaatttcttttgtacgcatctattcttagttcttgatctctgcctgtgggctcttcatcttcatcttca |
48308224 |
T |
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| Q |
201 |
aaaatactcttttaaccaagacaaatgcatataaagtaaacctataaaattaacaagacttacctaaacatgatcgtaatcagacatattacttataact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48308223 |
aaaatactcttttaaccaagacaaatgcatataaagtaaacctataaaattaacaagacttacctaaacatgatcgtaattagacatattacttataact |
48308124 |
T |
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| Q |
301 |
actcaatttttaatttaaaacaaattcaatagaaagagcattttgatatctcttaactggaaaaac |
366 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48308123 |
actcgattttttattta----------aatagaaagagcattttgatatctcttaactggaaaaac |
48308068 |
T |
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